Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0112 ATGGATACCCGTAAGAGAGGAAGGCCTGAATTCGGATTCAACGTTAACGGAGGACTCAAGAAAAACAAGCAAGAATTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGTACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTACCTGGTGGCTACAATGCTGTTGCCCAAATGATGAATCTGGCACCTGCTGCACCTCAAGCATCTAGAAACATTGCAGCCCCACCACCACCTGTCCCTAATGGATCTGCACAGTCTTCTGTCAAAACCCGCATATGCAACAAGTTTAATTCTGCTGAAGGCTGTAAATTTGGTGATAAATGTCATTTTGCCCACGGTGAATGGGAACTTGGCAAGCCTATTGCTCATTTTGATGATCATCGTGCCATGGGTCCCCCTCCAGTAGGTCGCATGGCTGGTCCTGGTCGAATGGAGCCGCCCCCTGGTCCTGCCACTAGCTTTGGTGCCAATGCTACAGCCAAGATCAGTGTAGAAGCTTCCCTTGCCGGAGCTATCATTGGGAAGGGTGGTGTAAACTCGAAGCAGATATGTCGCCAAACAGGAGCCAAACTTTCGATTCGAGAGCACGAATCGGATCCAAATCTCAGAAACATAGAACTCGAGGGAAGTTTCGAACAAATTAAGGAGGCGAGCAACATGGTAAAGGAATTACTTTTGACCTTGCAGATGTCTGCGCCCCCTAAATCGAACCAAGGTGCCCCGGGGTCGGCCGCTCCTGGAAGCAACTACAAGACCAAGCTGTGTGAGAATTTTTCAAAAGGATCTTGCACTTTTGGGGACAGATGTCACTTTGCACACGGTGCTGCGGAGTTGCGTAAAGGTGTATGA 888 0.491 MDTRKRGRPEFGFNVNGGLKKNKQELDSLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPAAPQASRNIAAPPPPVPNGSAQSSVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKPIAHFDDHRAMGPPPVGRMAGPGRMEPPPGPATSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLQMSAPPKSNQGAPGSAAPGSNYKTKLCENFSKGSCTFGDRCHFAHGAAELRKGV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0112 295 ProSiteProfiles Type-1 KH domain profile. 170 234 - -
Amo16g0112 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 242 IPR036612 GO:0003723
Amo16g0112 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 293 - -
Amo16g0112 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 293 - -
Amo16g0112 295 CDD KH-I 172 235 - -
Amo16g0112 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Amo16g0112 295 SUPERFAMILY CCCH zinc finger 261 292 IPR036855 GO:0046872
Amo16g0112 295 SMART kh_6 169 239 IPR004087 GO:0003676
Amo16g0112 295 SUPERFAMILY CCCH zinc finger 100 131 IPR036855 GO:0046872
Amo16g0112 295 Pfam KH domain 173 236 IPR004088 GO:0003723
Amo16g0112 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Amo16g0112 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Amo16g0112 295 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Amo16g0112 295 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Amo16g0112 295 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Amo16g0112 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Amo16g0112 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Amo16g0112 295 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Amo16g0112 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Amo16g0112 295 Gene3D - 95 132 - -
Amo16g0112 295 Gene3D - 262 293 - -
Amo16g0112 295 Gene3D K Homology domain, type 1 166 261 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0112 Amo-Chr16 1482544 1486157 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo16g0112 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0112 - - gmx:100803981 520.776