Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0109 ATGTTCTTGCTTCTTTCATCTAGAGCCAACCCAAGACACTCAAAAAGTAAAATACACTTGTTTCTTCGTTCTTTTTACATGGCTCTTTTGCTTTTACATTTTCAGGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTCATCCATGATAAGAATACAGGAAAATCTCGTGGCTATGGTTTTATCACTTACAAGTACATGGAATCAACTCAGCAAGCATTGAGAGCACCTAGCAAGTTAATTGATGGAAGATTGGCCGTCTGTAATCTGGCTTGTGAAGGACTTAGTGGATCAAGTAGTGCTCCTGATCTTGCCCAGAGGAAGCTTTATATTGGTAGCTTATCGCCCGAAGTCACGAGTGAAATGCTGCTTAACTATTTTTCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGCTTCGTTACATACAAGACATCAGAAGCTGCAAAGAAGGCCATCGATGACCAACAAAAGACTCTTGGGGGAAGGAATATAATAGTAAAATATGCTGATTCGCACAAGAGTAAAACTAGCCAGACATCATTTTCCCCAGGAGTGGTTCCAATGGCAGCCTTACCTATGGCCTCAGGATATGTGCAACCTGGAAAAACTCATCTTGGTACTACCCTGCCAGTTGGTTACACTTACCCACAAACTATAGCATCATACCCTTCTTATCAAAGCCCTCCCAGTGTACCTTCTCCTTATGCAGCTCAAGGACATGTTCCTTATCCAACTTCTTTTGCAAAGAAAGATCAACTTGGTATCCCAACCCAACCTGTGGCAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 861 0.4181 MFLLLSSRANPRHSKSKIHLFLRSFYMALLLLHFQAFQEHGEIEEGAVIHDKNTGKSRGYGFITYKYMESTQQALRAPSKLIDGRLAVCNLACEGLSGSSSAPDLAQRKLYIGSLSPEVTSEMLLNYFSRHGEIEEGSVAYDKDTNESRGFGFVTYKTSEAAKKAIDDQQKTLGGRNIIVKYADSHKSKTSQTSFSPGVVPMAALPMASGYVQPGKTHLGTTLPVGYTYPQTIASYPSYQSPPSVPSPYAAQGHVPYPTSFAKKDQLGIPTQPVAMNNYPYYYPKQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0109 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Amo16g0109 286 Gene3D - 95 197 IPR012677 -
Amo16g0109 286 Gene3D - 32 94 IPR012677 -
Amo16g0109 286 SUPERFAMILY RNA-binding domain, RBD 104 198 IPR035979 GO:0003676
Amo16g0109 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Amo16g0109 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 85 IPR000504 GO:0003723
Amo16g0109 286 SMART rrm1_1 19 90 IPR000504 GO:0003723
Amo16g0109 286 SMART rrm1_1 109 181 IPR000504 GO:0003723
Amo16g0109 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 117 IPR000504 GO:0003723
Amo16g0109 286 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 34 286 - -
Amo16g0109 286 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 34 286 - -
Amo16g0109 286 SUPERFAMILY RNA-binding domain, RBD 35 94 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0109 Amo-Chr16 1420818 1423539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0109 100 215 C2H2 Transcription Factor Family AT2G19380 32.203 7.75e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0109 K12741 - gmx:100776344 389.423