Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0106 ATGGCTCCGGGGGGAAGAACTGCCACCAATAACCATAAGAACCAACCACCTTCCTCCACAGTTGAGTCTCTAAATGGCTTGAAATTCGGCCAAAAAATATATTTTGAGGATTTGGGTCTCTCCACACCGTCAATCACTTCTTCAACTTCATCTTCTTCTTCTGCTGTTGGTGTTCCCAAGAAGGGTAGGGGCGGTTCGGTTCAGCATGCTCAGCAGCCACCGAGGTGCCAGGTTGAGGGTTGCAAAGCAGATCTGAGTGATGCTAAGGCTTACTATTCAAGGCACAAAGTTTGTGCCATGCACTCCAAATCCCCCACTGTCACTGTTTCTGGGCTCCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGGAAACGAAGTTGCCGCAGGCGGCTTGCCGGCCATAACGAACGTCGGAGAAAGCCCCCACCATCCAGCAACTTCTTAACCTCTCGTTATGCAAGACTTTCTTCGTCACTTTTCGATGATAGTGGCAAAGGTGGAAGCTTCGTGATGGAATTCGCTTCATACCCGAAGCTCGGTCTTAGGAACACAGTTCCAAATCCCAGATCATCTCAACCAAGCTGGCAGGGCTATTCAGAGACATCATCTGACCTTTTCTTGCAAGGTTCAGTGGGTGGGACAAGCATCCCCAATCTCAGACACCCTCTTCCTTCGAGCGAAAGTTATGCCGGCGTAGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGCCAAACATGGGGATCTAGTAACATGGCACCAAGTCTCGGGTTGAATAACATGTTGAATTTCAGTGGTGCACCTGTGACACAACTTGCTGCATCATCCCATGGTGAATCCATTCATCAAGTTCCGAATCCCTGGTGGTGTTCAAACAAGGTTGTCCCTGATCTAGGCCTCGGTCAATTCTCGCAGCTTCCTAATAGCCAAGTTCCCGGCGAGTTCGATGCACTGGAACCAGGTAGGAGGCATCATGTGAATCTAGAGTAG 1017 0.4916 MAPGGRTATNNHKNQPPSSTVESLNGLKFGQKIYFEDLGLSTPSITSSTSSSSSAVGVPKKGRGGSVQHAQQPPRCQVEGCKADLSDAKAYYSRHKVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSNFLTSRYARLSSSLFDDSGKGGSFVMEFASYPKLGLRNTVPNPRSSQPSWQGYSETSSDLFLQGSVGGTSIPNLRHPLPSSESYAGVADSSCALSLLSSQTWGSSNMAPSLGLNNMLNFSGAPVTQLAASSHGESIHQVPNPWWCSNKVVPDLGLGQFSQLPNSQVPGEFDALEPGRRHHVNLE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0106 338 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 338 IPR044817 GO:0003677
Amo16g0106 338 MobiDBLite consensus disorder prediction 43 77 - -
Amo16g0106 338 MobiDBLite consensus disorder prediction 43 57 - -
Amo16g0106 338 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
Amo16g0106 338 MobiDBLite consensus disorder prediction 7 23 - -
Amo16g0106 338 Pfam SBP domain 76 149 IPR004333 GO:0003677
Amo16g0106 338 SUPERFAMILY SBT domain 74 154 IPR036893 GO:0003677|GO:0005634
Amo16g0106 338 MobiDBLite consensus disorder prediction 1 23 - -
Amo16g0106 338 Gene3D - 66 137 IPR036893 GO:0003677|GO:0005634
Amo16g0106 338 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 11 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0106 Amo-Chr16 1385342 1387798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0106 27 325 SBP-box Gene Family AT2G42200 44.012 1.81e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo16g0106 SBP 8.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0106 - - ahf:112696101 662.529