Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0105 ATGATTTGCGACTACCTCTACGTGCAACTCAACCTCGTTGTCTTCTCGTCGATTTTGATTTCTCAGGGTTTGGCATCTACTCCTTCACCCGAAGTATCAGCTCTGCAGGATCTATACAAGGCTTTAAACTACCCTCCTCAGCTCCAAGGTTGGAATGGTAGTGATCCATGCGAGGAGTCTTGGAAAGGAATCGCTTGTTCCGGGTCATCAGTTATACACATAAAAATTCGCGGACTGAACCTCACTGGAAATTTTGGAAGCATGCTCCGTGATCTTCAGAACTTGAAGGAACTTGATGTCAGTTCTAATAACATAGGTGGAGAAATACCATTTAGCTTACCCCGCAATGCAAGAAATATGAATTTAAGCCACAATCTCTTAAATGGACCCATTGGCGATGTATTTACTGGCCTGGATGATCTCAAAGAAATGGACCTTTCATACAACAATTTCTCAGGAGATCTTCCAAGATCGTTTGGTTCCTTGAAAAACCTTGATAAATTGTTTCTGCAGAATAACAGATTTACTGGATCAGTCACCTACCTGGCTGAACTTCCACTTTCATATCTGAACATCCAAGACAATCTGTTTAGTGGCATTCTTCCACTCCACTTTCACACCATACCGAATTTACGGATTGGAGGGAATAACTTCCATTCAGAGGGCAGCTCTCCCCCTTGGCCTTTTCCTCTGGACACTGTACCAATAGCAGTTGAACGTAACTTTAGTCACCCACCCTCACACCCAGTTGTACATAACTTTAGTCACCCACCCATACACCCAGTTGAGCATAATACAACTGTGGCAAGTGCCATAAGGAACTATGCTCCTCCACCTCCCAAGGTTAGTCAGCACAAGGAAAAACATATGGGTCCCGGAGGAATAGCTTTTATGGTTGGTGCAGGAACACTAATGGCAACTGGTGTGGCACTCTTCGTTGCAATCCGTTTAAGTAAAAGGCGAGCACATATGCCAAGCTCAAAGAGCTTGGAAAGCAACCATTTCTCTTTACATTCTCATCCAAGCAGTGCAACAATAGAGGTCTCATCTACTGCTTTAGATGAGAGCCCACAAATCCCGGCTTTTGATCCTGCATCCCTCAGGGGTCCAATGGGATTGCCTCCTGTGCACCACAACAATATAGCCGACGCTTCAAGAAGAAGTTTTTCTAGAAGAAGCAGATCCACCGGAAGGACGAAAGTTTACACCGTATCAGAGCTTCAGTTTGCTACTAACAACTTCAATGAATGCAACGTTCTGGGAGAGGGCTCTCTTGGCACTGTATACAGAGCCAAATTTCCTGATGGCAAAATTCTGGCAGTGAAGAGCATAAACTTGGCGGGTGTGTCTTACAGAGAAGAGGAAAAGTTCTTGGATGTTATCTGCACGGCTTCCCGATTGAAGCACCCCAACATAGTAGCACTGAATGGCTACTGTTTGGAGCGGGGAAAGCATCTTCTTGTGTATGATTATGTTAGGAATTTGACTCTGCACGATGCTCTTCACAGAGACGTATACAAGCCTCTATCATGGATCCTCCGTCTCCGGATAGCTGTCGGCGTTGCTAACGCCCTCGACTACTTGCACTCAGCATTCTCCCCACCTGTTGCCCATGGAAACTTGAAGGCCGCCAATGTTCTTCTGGACGAGAATTTGATGCCTCGTCTTTCTGACTGTGGCTTGGCTGCTTTGAGACCACTGAGGAGCATTCAGGCTACCGAGGCTCCTATTGATGTAGGTTACCTGTCCCCTGACCATGGCAGAGCAGGAGGTAGCAGCAGAAAGAAAGATGTGTATGCCTTTGGGGTACTGCTTCTGGAAATGTTAACGGGAAGAAAAGCATTCGATGGTGGCAGGCCAATTGAGGAGCAGTACCTAGTGAAGTGGGCTTCACCCAGGCTTCACGATAACGCCAGTTTGGAGCAGATGGTGGATCCCGGTATGAAGAGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGCTATCGTCTCACTCTGCATACAGCCTTCGAGGCATTTTCGTCCTCAGATGTCAGAAGTTGTGGACTCGCTTGTATCATTCTCGCAAAAGTTCAACATAGCAAAGGGCGGTGGTAGAGTAGGAGCAGATGGTGGCAACTTCATTGAACTTGAATCATTTGAGAAATCTTTCCGTTCAACAAACTCACGATTTATGGGTTCACCGGCGTTGAGCCATGTATCCGCCTAA 2211 0.4627 MICDYLYVQLNLVVFSSILISQGLASTPSPEVSALQDLYKALNYPPQLQGWNGSDPCEESWKGIACSGSSVIHIKIRGLNLTGNFGSMLRDLQNLKELDVSSNNIGGEIPFSLPRNARNMNLSHNLLNGPIGDVFTGLDDLKEMDLSYNNFSGDLPRSFGSLKNLDKLFLQNNRFTGSVTYLAELPLSYLNIQDNLFSGILPLHFHTIPNLRIGGNNFHSEGSSPPWPFPLDTVPIAVERNFSHPPSHPVVHNFSHPPIHPVEHNTTVASAIRNYAPPPPKVSQHKEKHMGPGGIAFMVGAGTLMATGVALFVAIRLSKRRAHMPSSKSLESNHFSLHSHPSSATIEVSSTALDESPQIPAFDPASLRGPMGLPPVHHNNIADASRRSFSRRSRSTGRTKVYTVSELQFATNNFNECNVLGEGSLGTVYRAKFPDGKILAVKSINLAGVSYREEEKFLDVICTASRLKHPNIVALNGYCLERGKHLLVYDYVRNLTLHDALHRDVYKPLSWILRLRIAVGVANALDYLHSAFSPPVAHGNLKAANVLLDENLMPRLSDCGLAALRPLRSIQATEAPIDVGYLSPDHGRAGGSSRKKDVYAFGVLLLEMLTGRKAFDGGRPIEEQYLVKWASPRLHDNASLEQMVDPGMKRTFSSKALSRYAAIVSLCIQPSRHFRPQMSEVVDSLVSFSQKFNIAKGGGRVGADGGNFIELESFEKSFRSTNSRFMGSPALSHVSA* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0105 736 SUPERFAMILY L domain-like 31 212 - -
Amo16g0105 736 Gene3D Ribonuclease Inhibitor 28 235 IPR032675 -
Amo16g0105 736 SUPERFAMILY Protein kinase-like (PK-like) 389 685 IPR011009 -
Amo16g0105 736 Pfam Protein tyrosine and serine/threonine kinase 418 685 IPR001245 GO:0004672|GO:0006468
Amo16g0105 736 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 2 707 - -
Amo16g0105 736 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Amo16g0105 736 ProSiteProfiles Protein kinase domain profile. 414 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0105 736 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Amo16g0105 736 Gene3D Phosphorylase Kinase; domain 1 377 491 - -
Amo16g0105 736 PANTHER OS01G0253100 PROTEIN 2 707 IPR045271 GO:0004714|GO:0006468
Amo16g0105 736 Gene3D Transferase(Phosphotransferase) domain 1 493 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0105 Amo-Chr16 1379962 1384417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0105 10 736 Strubbelig Receptor Gene Family AT5G06820 48.489 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Amo16g0105 PK_Tyr_Ser-Thr 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0105 - - gmx:100775254 939.488