Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0095 ATGGAGCTTGCTTTGAGCTTAGGGGAAGCACCGAAGTCCTTCACTTTGCTTGACAACACTCCCAAACTACCTAATAACAAGGATCCAGTGGGTTTCTGCATAGCACTTGGTGCTGCTGCTTCCTCCGCCGGAAAATCCTCTGAGGAAGAGAGAAGAGGATCCTCAGATCCGCCAGTTCAGCTCGACCTTCTCCCTTCAACGCCGGTTCTTCGCTCCCAACACCCATCTTCACACCTTCGAATTCCATGGCTCAACGATGCACTTGGTTTGGAGAGGGTGACATCGGAGGCACCGGCGGCGAGGGCGTTGGACGTGAACTCTTTCCCGGTGGCTCCTGCGGCGGGAGAAGACGGGGACGACGGCGCTGCACTGTCTTCGCCTAACAGCGCCGTATCGTCCTTTCAGATGGATTTCTGTCTGAGAAACGGGAACGGTGGTAACGGCGGTGATGGTGCGGCGGCGATGATGAGGAACAGGAGAGACGTGGAAGGTGGTGAGGGCAACGACAGAGGCACCAGCGATGACGACGAGAACGGATCCACCAGGAAGAAGCTCAGGCTCTCTAAGGAACAATCTGCGTTTCTTGAAGAGAGCTTCAAAGAACACACCACCCTTAATCCTAAGCAGAAACTGGCTCTTGCGAAACAGTTAAACCTTCGTCCCCGTCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAGGTGGATTGCGAGTACTTGAAGAGGTGCTGTGACACCTTAACMGAAGAGAATCGGAGGTTGCAGAAGGAGCTTCAAGAGCTGAGGGCATTAAAGACTTCTCAACCCTTCTACATGCAGCTTCCGGCCACCACTCTCACAATGTGTCCTTCTTGTGAAAGGGTCGCCACCAACACCGCCGCTAATAACAATGACGCTTCTCAGATTGCTTCCGCTTTGTCTCTTAGTAACAAGCCCAGAATCTTGCCATTTCCTAATACTCAGGCCCATCCTCCTCCGGCCCAAAAGGCCCATCAATGA 1020 0.5284 MELALSLGEAPKSFTLLDNTPKLPNNKDPVGFCIALGAAASSAGKSSEEERRGSSDPPVQLDLLPSTPVLRSQHPSSHLRIPWLNDALGLERVTSEAPAARALDVNSFPVAPAAGEDGDDGAALSSPNSAVSSFQMDFCLRNGNGGNGGDGAAAMMRNRRDVEGGEGNDRGTSDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTAANNNDASQIASALSLSNKPRILPFPNTQAHPPPAQKAHQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0095 339 CDD homeodomain 182 239 IPR001356 GO:0003677
Amo16g0095 339 ProSiteProfiles 'Homeobox' domain profile. 178 238 IPR001356 GO:0003677
Amo16g0095 339 Gene3D - 186 236 - -
Amo16g0095 339 SMART HOX_1 180 242 IPR001356 GO:0003677
Amo16g0095 339 MobiDBLite consensus disorder prediction 43 76 - -
Amo16g0095 339 SMART halz 238 281 IPR003106 GO:0006355|GO:0043565
Amo16g0095 339 Coils Coil 244 274 - -
Amo16g0095 339 MobiDBLite consensus disorder prediction 320 339 - -
Amo16g0095 339 SUPERFAMILY Homeodomain-like 168 239 IPR009057 -
Amo16g0095 339 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Amo16g0095 339 Pfam Homeodomain 182 236 IPR001356 GO:0003677
Amo16g0095 339 Pfam Homeobox associated leucine zipper 238 272 IPR003106 GO:0006355|GO:0043565
Amo16g0095 339 Pfam HD-ZIP protein N terminus 34 134 IPR006712 GO:0005634
Amo16g0095 339 MobiDBLite consensus disorder prediction 161 187 - -
Amo16g0095 339 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 308 - -
Amo16g0095 339 PANTHER - 2 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0095 Amo-Chr16 1266660 1268512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0095 58 304 Homeobox Transcription Factor Family AT5G47370 53.333 6.94e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo16g0095 HD-ZIP_N 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0095 K09338 - gmx:100776113 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0095 16 1266660 1268512 Amo12g3328 12 122433820 122436609 PCT
Amo12g3328 12 122433820 122436609 Amo16g0095 16 1266660 1268512 PCT