Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0088 ATGGCTCCTGGAGGCAGTATTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAACAGGCAAAGCTAAATATGAGTCGAAGACTAGTAGTACAGTTATGAAATCTTGTGTTGGGTTGAATGGAAAGAATGGACTTAGTTCAAAGAATGGCGTGTATGACTTACTTGAGTGCCCTGTTTGCAAGAATCTGATGTACCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTCCAATTGTAAGATTGAAGTCCATAATCTTTGCCCAACCTGTCACCATGATCTCAAGAACATAAGGTGTTTGGCACTGGAGAAAGTTGCAGAATCGTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCATACTACACAAAGCTCAAACACGAGCAAAATTGCAGACTCCGTCCATTCAGTTGTCCCTATGCTGGAGCCGAGTGCTCTGTGATGGGTGACATCCCAAGTCTAGTTTCCCATCTCAAGGATGATCACAAGGTAGACATGCACAATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGGTATTTTTGCTTGCACTTTGAGGCATTCCAGCTCGGGACAGCTCCGGTATATATGGCCTTTCTTCGGTTCATGGGTGATGACAACGAAGCCAAGAAATTCAGCTACAGCCTGGAAGTCGGCGCGAGTGGACGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGCGACAGTCATAGGAAAGTTAGAGATAGTCAAGATGGACTAATAATTCCGAGGAGCTTGGCTCTTTATTTCTCTGGTGGGGATGGAAAAGAGTTGAAGCTGAGGATCACTGGTCGTATATGGAAAGAAGATTGA 930 0.4312 MAPGGSIFKEVLESHLMSSDYETGKAKYESKTSSTVMKSCVGLNGKNGLSSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLKNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCRLRPFSCPYAGAECSVMGDIPSLVSHLKDDHKVDMHNGCTFNHRYVKANPHEVENATWMLTVFNSFGRYFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKKFSYSLEVGASGRKLIWQGIPRSIRDSHRKVRDSQDGLIIPRSLALYFSGGDGKELKLRITGRIWKED* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0088 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 113 IPR013083 -
Amo16g0088 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 168 IPR013083 -
Amo16g0088 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Amo16g0088 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 302 IPR008974 GO:0005515
Amo16g0088 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Amo16g0088 309 SUPERFAMILY RING/U-box 53 103 - -
Amo16g0088 309 SUPERFAMILY TRAF domain-like 114 306 - -
Amo16g0088 309 CDD RING-HC_SIAHs 59 96 - -
Amo16g0088 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 309 - -
Amo16g0088 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Amo16g0088 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0088 Amo-Chr16 1182041 1186316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0088 1 309 C3H Transcription Factor Family AT2G41980 78.641 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0088 K04506 - gmx:100813966 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0088 16 1182041 1186316 Amo16g0088 16 1182041 1186316 ECH