Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0087 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGTGGCCCGCCTGCCAACCAAGCCACCACTGCACCGCCTCGAGGGGGAAACACATACGGTGGAGGAGGCAATGACAGAGGAGAGCCAAGGGGCAATGCTGCCAAGACTGGTGCTCCACAGAAAGTGCTGCCAATTGAGATTCCATCTATGCCATTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTTCCAAGTCTTTCATTGGAGAAGGTTCCTATGGACGGGTTTACTATGCAAAATTGGATGATGGAACAGATGCTGCAATCAAGAAGCTGGATACCAGTTCTTCAACAGAATCTGACACTGATTTCACAGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGATAATTTTGTGGAGATGATTGGATACTGTCTAGAGGCAAATAACAAAATCTTGATTTATCAATATGCAAGTCTTGGTTCTTTGCATGACATATTACACGGAAGGAAGGGTGTACAAGGGGCTGAACCAGGTCCAGTTTTAAGCTGGAATCAGAGAGCGAAAATCGCGTTTGGTGCGGCAAAAGGACTTGAGTATCTTCATGARAAGTGTCAGCCTTCTATAGTTCACCGTGATGTTAGATCCAGCAATGTAYTACTCTTCAATGACTATGACGCCAAGATTGCAGATTTCAGCTTGACAAACCAGTCTTCTGACACCGCGGCTCGCCTACATTCAACAAGAGTGTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCAATGACTGGACAGATAACACAGAAGAGTGATGTTTACAGTTTCGGAGTYGTGCTTTTAGAGCTCTTAACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACGATGACTATCCCCCAAAGGCAGTTGCTAAGTTGGCAGCGGTTGCAGCACTTTGTGTTCAGTATGAAGCAGATTTCAGGCCAAACATGACTATTGTAGTCAAAGCTCTCCAGCCACTTCTGAATGCAAAACCTGGTCCTGAAGCAAATGCTTGA 1098 0.4526 MLCCGGAEEESSGPPANQATTAPPRGGNTYGGGGNDRGEPRGNAAKTGAPQKVLPIEIPSMPLDELNRLTGNFGSKSFIGEGSYGRVYYAKLDDGTDAAIKKLDTSSSTESDTDFTAQLSVVSRLKHDNFVEMIGYCLEANNKILIYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEYLHEKCQPSIVHRDVRSSNVLLFNDYDAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNDDYPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPGPEANA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0087 365 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 362 - -
Amo16g0087 365 SMART tyrkin_6 73 351 IPR020635 GO:0004713|GO:0006468
Amo16g0087 365 Gene3D Phosphorylase Kinase; domain 1 41 149 - -
Amo16g0087 365 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Amo16g0087 365 Gene3D Transferase(Phosphotransferase) domain 1 151 361 - -
Amo16g0087 365 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Amo16g0087 365 CDD STKc_IRAK 79 354 - -
Amo16g0087 365 Pfam Protein tyrosine and serine/threonine kinase 78 351 IPR001245 GO:0004672|GO:0006468
Amo16g0087 365 ProSiteProfiles Protein kinase domain profile. 73 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0087 365 MobiDBLite consensus disorder prediction 1 51 - -
Amo16g0087 365 PANTHER OS03G0226300 PROTEIN 1 362 - -
Amo16g0087 365 SUPERFAMILY Protein kinase-like (PK-like) 53 351 IPR011009 -
Amo16g0087 365 PIRSF ILK 36 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0087 Amo-Chr16 1176938 1180074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0087 37 358 Receptor kinase-like Gene Family AT3G58690 43.252 7.81e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Amo16g0087 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0087 - - gmx:100786291 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0087 16 1176938 1180074 Amo16g0087 16 1176938 1180074 ECH