Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0078 ATGGACAAAGCTGAGAGAGAGACGCACGACTTCATGAACGTCGACTCTTTCTCTCAGCTTCCCTTCATCCGCCCTGCTCCGCCCCCTAAAGAAAAGGGCATCAGACTCTTCGGCATAGAATTTGGCGACACTYCGCCAATTTCTRCTGYCCAAGAGTCTGARTCCGCTGACACAACCACTAACGAAAACAGCAACAACAACTTAGAGAATAATAACAACAACAACAACAACGGCGAGAGTAGCCGGAGGTTCGAATGCCACTACTGCTGTAGAAACTTTCCGACTTCTCAAGCCCTCGGCGGACACCAAAACGCACACAAGAGAGAGAGGCAACACGCGAAACGACAACACCTTCAGTCAGCCATGGTTCACGGTTCCCTCGCCGAAGGCCACCACCAAGTTTACGGATTCATGAACTACAGGTTCGGATCTTTCGGTTCTTCTCCAACAATGGCTGCTTATCCTACATGGAATAACAGTAGCCACAACAACACCGGCGTCGGAAGGTTCTACGGAACCTCGTCATCATATTCTTCTTCTTCTTCTTCTTCTCATCATCAACAGCCACCCATCAATGGTAACCCCTTGTCCGTGTGGCGAATCCCTAACGGTGGTGGTGGTGGTGGTAGTAACAACCCTATCTTGGGGCGCGAACGGGGGTTTCCTTTGCTTGCAGGGGAAGAAGTGAACGCAAGAATAGGAGCAACAACGAGGGTGGAATTAAGTCCCAATAATAATAATGGTTCACAAAACGGGTATGTTTATGACTCCAAAACAAGCGTTAGTGACCATGTCAGCTTGGATCTTCATCTGTAA 816 0.4865 MDKAERETHDFMNVDSFSQLPFIRPAPPPKEKGIRLFGIEFGDTXPISXXQESESADTTTNENSNNNLENNNNNNNNGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRQHLQSAMVHGSLAEGHHQVYGFMNYRFGSFGSSPTMAAYPTWNNSSHNNTGVGRFYGTSSSYSSSSSSSHHQQPPINGNPLSVWRIPNGGGGGGSNNPILGRERGFPLLAGEEVNARIGATTRVELSPNNNNGSQNGYVYDSKTSVSDHVSLDLHL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0078 271 MobiDBLite consensus disorder prediction 99 118 - -
Amo16g0078 271 MobiDBLite consensus disorder prediction 158 217 - -
Amo16g0078 271 MobiDBLite consensus disorder prediction 48 81 - -
Amo16g0078 271 MobiDBLite consensus disorder prediction 19 81 - -
Amo16g0078 271 PANTHER ZINC FINGER PROTEIN GIS 1 271 - -
Amo16g0078 271 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Amo16g0078 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Amo16g0078 271 MobiDBLite consensus disorder prediction 158 194 - -
Amo16g0078 271 Pfam C2H2-type zinc finger 83 108 - -
Amo16g0078 271 PANTHER ZINC FINGER PROTEIN GIS 1 271 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Amo16g0078 271 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0078 Amo-Chr16 1016557 1018024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0078 1 271 C2H2 Transcription Factor Family AT2G41940 41.053 1.53e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0078 - - vun:114190818 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0078 16 1016557 1018024 Amo16g0078 16 1016557 1018024 ECH
Amo16g0078 16 1016557 1018024 Amo06g0428 06 6104630 6105861 hybridization