Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0067 AGGTCGGAAGTGGAAGAGTCGGAGTACTATTCAGAGGAATTGGTCCGTGCCCCTGATCCAGTTGAAGTTCTCCATGTTGATGGTGAAGGGAGCAATGTAGGCGAGGAAGGGAGTGAGGGATTCGAAGGGGACGAAGGTTTTGAAGAAGAGTCAGAGATACATGATGAATTTGGGGATGGGTTCTATGACAACTGGGAAGAAAGAGCAATTAATGAAATTGCTGATCTAGGTTGTATGAATTTGAAGGAAATCACAGTGGAAGAGATTAAAAGTCTCCATTTTCCAGATCGGGAAGTCGCATTTTTATTCTACAACTTATATGCAAAAATGAATGGGTTTGCCGCTCGAAGGTATAGGTCTCGGCGTAATCTAAATAATGAGTTGATACAACAATCTTTTGTATGCTTCAGGCAGGGCTTTCGGAAGGCAAGAATTTGTGATGGAGTCGAAGTTGCTGATTGGAAACGGGAGCCGAAGCCAGAGACTAGGTGTGGCTGTGAGGCAGAAATGCGCGTCCATATCGACAAGGATACGGGCAGATGGATTGTAACATACTTCCAGGAATTTGTGCATTCCCGGCACAACTTAAAAGACTTTGTTGAGCAATTCTTTCGATGTATTAGTCAAATGAGGTCCCGGGAAGCATTCTCTGACTTACAATCCACTGTTGGGGAKATGGTACTACAAAGCCCTCTACGATCGCTTGAAAGGTCTGCGGCAAGTGTACTGACAAGAGAGATATTTCTTATTTTCCGACCAATGCTTTCACGGGCTTGCACGTTAAAGGTAAGGTCGTGTACATTCACAGCATGTTCAGATATCTACTCCCTATTCCGGTCTGGAGATTCTGCCCGAGAGTGGCGCGTTTCACATTATCGAAATGGGTCATTCTTCAAGTGTTCGTGCATGAGGATGGAGACCCTTGGGATTCCTTGTGACCACATTATAGCAGTATTTCATCACCTTGATATCACTGAAATGCCTGCGAGTGTARTATTGGAGAGGTGGTCAAAAGATGCCCGTTCGAGGGTRAGGGCTTTCATGGAAAAGGGACCGTTTTGCTGGGATTCAATGGTTACCTGCCGCAATTGGATGTTGAATGACCTATGCAGGGAGTTGTGTGTGCTTGCTTCTGCACRAGTGGATGATTTTGTRGACGTCACTGGSAAATTGAGAAATGAAATTTYGCACTTGAAAAGCAAGAGAGTTTCTCCAAKTGGGGAAGGAACTGATCCTCTGWTGTCATCTACTCTTGAGGATTGTGTAAGGGATCCACAGGTTCTACGTCACMACAAGCGCYGTAAATTTGGTGTGGGTAGGCAGCCATCTAGCAAGGGTATAAAGAGATGTGGAATTTGCCGCGCGGTTGGWCATAACCGATTATCTTGTTCACAAAGGCATACACACGGGCAARGACACACTGCTGTTGATAGTGGTACCCAACGGAGGGCTGTTTATGAAGAGGCTGATTATRGTGACTATGAAGATTCATGGGAAGAGTGCCACCTTTGGAGCGGTCACGATRCTAGCGAGAAMCATGAAGAMGAATCTTGCGAGGAAGACCATTACTTGGATGTATCTTTGTCGGAGCCATGA 1596 0.4505 RSEVEESEYYSEELVRAPDPVEVLHVDGEGSNVGEEGSEGFEGDEGFEEESEIHDEFGDGFYDNWEERAINEIADLGCMNLKEITVEEIKSLHFPDREVAFLFYNLYAKMNGFAARRYRSRRNLNNELIQQSFVCFRQGFRKARICDGVEVADWKREPKPETRCGCEAEMRVHIDKDTGRWIVTYFQEFVHSRHNLKDFVEQFFRCISQMRSREAFSDLQSTVGXMVLQSPLRSLERSAASVLTREIFLIFRPMLSRACTLKVRSCTFTACSDIYSLFRSGDSAREWRVSHYRNGSFFKCSCMRMETLGIPCDHIIAVFHHLDITEMPASVXLERWSKDARSRVRAFMEKGPFCWDSMVTCRNWMLNDLCRELCVLASAXVDDFVDVTGKLRNEIXHLKSKRVSPXGEGTDPLXSSTLEDCVRDPQVLRHXKRXKFGVGRQPSSKGIKRCGICRAVGHNRLSCSQRHTHGQXHTAVDSGTQRRAVYEEADYXDYEDSWEECHLWSGHDXSEXHEXESCEEDHYLDVSLSEP* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0067 531 ProSiteProfiles Zinc finger SWIM-type profile. 287 323 IPR007527 GO:0008270
Amo16g0067 531 SMART 26again6 298 325 IPR006564 GO:0008270
Amo16g0067 531 Pfam FAR1 DNA-binding domain 103 188 IPR004330 -
Amo16g0067 531 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 186 IPR031052 GO:0006355
Amo16g0067 531 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 185 344 IPR031052 GO:0006355
Amo16g0067 531 MobiDBLite consensus disorder prediction 19 49 - -
Amo16g0067 531 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 66 186 - -
Amo16g0067 531 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 185 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0067 Amo-Chr16 878451 881063 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g0067 FAR1 5.2e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0067 - - ahf:112758016 677.552