Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0054 ATGAAGGACTTGTTAGTGGATTCCCCAGTTTGTGTTCTTGAGGATTTCCTAAGGACCTCAGAATCAGAATCAAGCACTTATTCTTCCAAAGAGCACACTTTGGATTCTGAGTCTCATCAAGATAAGCCTAAACATGTTTCTAAGTGGCAGGTGGAAGGTGGAATGCATCTGGTTCTTGAATTGTCTGAAAAAGGAAGCCTAGCTTCAGTTCTTTATGGGTCCAAGGAGAACCTTCCCTGGTCTATTAGGCAGAGAATTGCATTAGGAACAGCAGAGGGAATATTATATCTTCATGAAGGTTGTCAAAGAAGAATTATCCATAGAGATATAAAAGCTGCAAATATCTTACTCACTGATGACTTTGAGCCTCAGATTTGTGATTTTGGGCTTGCAAAATGGCTACCAGAGAATTGGACTCACCACAGTGTTACAAGATTTGAAGGGACATTTGGATACCTTGCTCCAGAATACTTACTCCATGGCATAGTAGACGAGAAAACAGATGTATTTGCCTTTGGTGTTGTGCTATTAGAATTAGTAACTGGCCGGAGAGCGCTTGATTACTCGCAACAAAGTCTTGTCCTATGGGCAAAACCTTTGCTGAAGAAGAATAAAATTAGGGAGTTGATTGATCCTTCACTAGGAGGTGATGACTTTGATTATAGACAGATTAATGTTATGCTCTTGGCAGCTTCTTTATGCATACAACAATCTTCAATTCGTCGTCCCTCTATGAGACAGATTGTGCAGCTTCTGAAAGGGAATCTTAGCTGCATCAAGTTTGCAAAGAAATCTCGAGTTCCATTCTTCACAAGAGTCTTTCAAGACGAGTTTCTTGACTCTGATTAG 849 0.4028 MKDLLVDSPVCVLEDFLRTSESESSTYSSKEHTLDSESHQDKPKHVSKWQVEGGMHLVLELSEKGSLASVLYGSKENLPWSIRQRIALGTAEGILYLHEGCQRRIIHRDIKAANILLTDDFEPQICDFGLAKWLPENWTHHSVTRFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNKIRELIDPSLGGDDFDYRQINVMLLAASLCIQQSSIRRPSMRQIVQLLKGNLSCIKFAKKSRVPFFTRVFQDEFLDSD* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0054 282 PANTHER OS08G0249100 PROTEIN 49 280 - -
Amo16g0054 282 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0054 282 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0054 282 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0054 282 SUPERFAMILY Protein kinase-like (PK-like) 49 252 IPR011009 -
Amo16g0054 282 Gene3D Transferase(Phosphotransferase) domain 1 63 266 - -
Amo16g0054 282 PANTHER PROTEIN KINASE FAMILY PROTEIN 49 280 - -
Amo16g0054 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0054 Amo-Chr16 792950 794834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0054 78 252 Trihelix Transcription Factor Family AT5G38560 48.370 4.86e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo16g0054 Pkinase 2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0054 - - gmx:100780587 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0054 16 792950 794834 Amo16g0648 16 10522937 10528282 ECH
Amo16g0054 16 792950 794834 Amo19g1760 19 49631678 49632607 ECH
Amo16g0054 16 792950 794834 Amo16g0054 16 792950 794834 ECH
Amo16g0054 16 792950 794834 Amo12g3017 12 117794711 117800523 ECH
Amo14g0478 14 6699027 6701417 Amo16g0054 16 792950 794834 ECH
Amo16g0054 16 792950 794834 Amo06g0442 06 6273619 6276098 hybridization
Amo16g0054 16 792950 794834 Amo12g3017 12 117794711 117800523 PCT
Amo12g3017 12 117794711 117800523 Amo16g0054 16 792950 794834 PCT