Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0053 ATGTCGCTCTTCATCTTCCTCTTCTTTCTCTTCCTCCTCCCGCCGCCATCGCTCTCCCAAAACGACAACGTAACCTGCCCACTCAACACCACCCTCCTCACCACCCTAGGCGGCGGCTCCGAACCATCCTTCGACTCATCCTCAACGTGTCACAACGTCCTCCAAACCCTCCACCTCCTCCAAGCCGACTACCTCCGCCGCCAATCCCGCTTCGTTCCGCCGTTAAACTCCTCCGCCTCATGCTGGTCCACCTTTCAATCCTACATCACCAAATACGAACCCAATTTCGACGTTCGCTCGCGCTGCGGCCTCCAAACCTCCTGGATCTCCTATGGCTGCATGAACATCACCACCCTCCAACAATTCGAGTCCGTCGTCCCCGCCGCAACCATCCAAAGCGTTAAAAGTAGCTGCAACCAGTCTTTGGATAACAACGCACCCTGCGCCAGCTGCACCACCAGCTTGTCCAACTTGCAGTCCTACTTGAACGGCTCCACCGTCGGCAACGTCTCCGAGTGCAGGTCCTACACTTCTATCTACGCTGCTTATCTTGCTGACCCTACTGATACCGGCACCGCTAAGTGCTTGTTCGGCCTTGATTTCTCTTCCTCCGGGAAAAGCAACAACGGTAAGAAGGTTCTTATTGGTGTTGTTGTTGCTGTTTTCTTTGTTTTGGGGTTGGTTTTGTTTGGTGGGTTCTGCGGTTACTTGAGGTGGAAGAAGAAGAGGAACGAGATTACGAAGAAAGGTGGGGTTGGCATGGATCAGATTGGTTTGAGTTCTTCTGGATTGGACTCCATGAACCAGAGCACTACCTTGATTAGGTTCAGCTTCGATGAAATCAAGAGAGCCACCAGGAATTTCTCAAGGGATAACATAATTGGGAGTGGCGGTTATGGCAACGTTTACAAGGGTTTGTTGAACGATGGATCTCAGGTTGCTATGAAGAGGTTCAAGAATTGTTCTGTTGCAGGTGATGCCAGCTTCACTCATGAGGTTGAGGTCATTGCCAGCGTTAGGCATGTCAATCTTGTTGCTTTGAGAGGCTATTGTACGGCCACAACTAATTTAGAGGGTCATCAGAGGATTATTGTGACTGATTTGATGGAAAATGGGAGTCTCTATGATCACTTGTTTGGGTCAAGAGGGAAGAAATTGAGTTGGCCCCTTCGGCAGAAGATAGCTCTCGGAACTGCTAGGGGTTTGGCTTATCTGCATTACGGCGCGCAGCCGTCAATCATTCACAGGGACATTAAGGCTAGCAATATTCTTCTTGATGAGAAATTTGAGGCCAAGGTCGCAGATTTCGGGTTGGCAAAGTTCAATCCGGAGGGAATGACACATATGAGTACTAGAGTTGCTGGTACCATGGGGTATGTTGCGCCGGAGTATGCGCTCTATGGGCAATTGACAGAGAGGAGTGATGTTTTCAGCTATGGTGTCGTGCTTCTTGAATTGTTGAGTGGGAGGAAGGCTCTGGAGACGGACAGCGATGGACAGCCAAATGCACTGACTGACTTGGCCTGGTCATTGGTTAGGGAAGGTAAATCATTGGATGTTATTGAAGATGGAATGCCGGAACAGGGCGCGCCGGAGGTTCTTGAGAAGTATGTGTTGGTTGCTGTGCTGTGCTCACATCCTCAGTTGTATGCTAGGCCTACAATGGACCAGGTTGTTAAGATGCTGGAGACCGATGAGTCTGTGCCTTCGGTTATGGAAAGGCCAATACCTTTTACTGCTGGGAGGATTGATATTGAGAAATCTGCTCTAAGCAACTCAGGGCAGCTTTGTAGTCCAACCGGTTATCAGGCATTCACAATGCAGAGTAAACACCTTTCGGATCCTAATAAGCAAGAAGAGCTTAAGGAAGAAGAAGAGGGAAACTCTGAGTCCGGGACCATGAGCGTGGATTGA 1914 0.4979 MSLFIFLFFLFLLPPPSLSQNDNVTCPLNTTLLTTLGGGSEPSFDSSSTCHNVLQTLHLLQADYLRRQSRFVPPLNSSASCWSTFQSYITKYEPNFDVRSRCGLQTSWISYGCMNITTLQQFESVVPAATIQSVKSSCNQSLDNNAPCASCTTSLSNLQSYLNGSTVGNVSECRSYTSIYAAYLADPTDTGTAKCLFGLDFSSSGKSNNGKKVLIGVVVAVFFVLGLVLFGGFCGYLRWKKKRNEITKKGGVGMDQIGLSSSGLDSMNQSTTLIRFSFDEIKRATRNFSRDNIIGSGGYGNVYKGLLNDGSQVAMKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSRGKKLSWPLRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALETDSDGQPNALTDLAWSLVREGKSLDVIEDGMPEQGAPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSVMERPIPFTAGRIDIEKSALSNSGQLCSPTGYQAFTMQSKHLSDPNKQEELKEEEEGNSESGTMSVD* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0053 637 CDD STKc_IRAK 294 563 - -
Amo16g0053 637 Pfam Protein kinase domain 289 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0053 637 SUPERFAMILY Protein kinase-like (PK-like) 265 563 IPR011009 -
Amo16g0053 637 MobiDBLite consensus disorder prediction 613 629 - -
Amo16g0053 637 Pfam SPARK 21 173 IPR043891 -
Amo16g0053 637 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Amo16g0053 637 SMART serkin_6 288 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0053 637 MobiDBLite consensus disorder prediction 606 637 - -
Amo16g0053 637 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 23 615 - -
Amo16g0053 637 PANTHER OS01G0253100 PROTEIN 23 615 IPR045271 GO:0004714|GO:0006468
Amo16g0053 637 Gene3D Transferase(Phosphotransferase) domain 1 369 573 - -
Amo16g0053 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Amo16g0053 637 Gene3D Phosphorylase Kinase; domain 1 257 367 - -
Amo16g0053 637 ProSiteProfiles Protein kinase domain profile. 288 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0053 Amo-Chr16 787720 789990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0053 7 607 Receptor kinase-like Gene Family AT2G48010 61.944 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Amo16g0053 Pkinase 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0053 - - gmx:100786298 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0053 16 787720 789990 Amo16g0053 16 787720 789990 ECH
Amo16g0053 16 787720 789990 Amo12g3011 12 117745750 117747866 ECH