Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0024 ATGACCATATCAATGGTGTTGTGCAATCCATCAACACAACCAATCATAAATGTTCCTTGCAATGGTCCAAAACTGATCAACGCTAAGCAGAAAGAGAAGGTGGTTTTGGTCATGGGAGCAACCGGGACCGGAAAATCACGGCTCTCCATCGACCTTGGAACATGTTTTCCATCGGAAATCATCAACTCCGACAAAATTCAAGCCTATGAAGGGCTAGAAATTGCCACAAACAAGGTCACAAAGGAAGAACAACGAGGCGTGCCACATCATTTGTTAGGGATACACAATCCCTACTCTGAGTTCACGGCCAATGATTTCTGCGACATGGCCTCGTTGGCCATGGAATCAATCATTGGCCGCGAACAACTCCCGATCATAGTCGGGGGGTCGAATTCCTATGTGGAAGCATTAGTGGAAAGATTTGGATCAAGGTATGATTGGTTTTTTCTTTGGTTGGATGTATCAATGCCAGTTCTTCATTCCTATGTATCGAAAAGAGTGGATGAGATGGTTGAGAAGGGAATGGTGAATGAATTAAGACCCTTTTTCAGTCCCAACGGGGATTACTCAAAAGGGATAAGAAAAGCAATTGGGGTGCCGGAATTCGACATGTTCTTTCGAAGTGAAGGGACAACATGGGATGAGAGAACGAAGCAGAGGTTGTTTGATGAGGCGATCAGGGGAGTGAAGAAGAACACGTGCACATTGGCGTGCAAGCAGTTTGAGAGGATTGAGAGGCTTAGGAATGTGAAGAGATGGAACATGCAGCGTGTGTGTGCCACAAGAGTGTTTGAAATGCATGGAAATGGTGATGATGAAGCAGATGAAGCGTGGAGGAAGATTGTGGCAGAGCCAAGTGCGAGATTAGTGGCACAGTTTCTATACAATGAAGCAATTAATAATAATAATATTAATAATAATTATTCTGGGATTAGTTCGCGTGCCGGTGTGCCCTGTTTAAGTCCAACACTAATGATGGTGAAAATTTGA 990 0.4404 MTISMVLCNPSTQPIINVPCNGPKLINAKQKEKVVLVMGATGTGKSRLSIDLGTCFPSEIINSDKIQAYEGLEIATNKVTKEEQRGVPHHLLGIHNPYSEFTANDFCDMASLAMESIIGREQLPIIVGGSNSYVEALVERFGSRYDWFFLWLDVSMPVLHSYVSKRVDEMVEKGMVNELRPFFSPNGDYSKGIRKAIGVPEFDMFFRSEGTTWDERTKQRLFDEAIRGVKKNTCTLACKQFERIERLRNVKRWNMQRVCATRVFEMHGNGDDEADEAWRKIVAEPSARLVAQFLYNEAINNNNINNNYSGISSRAGVPCLSPTLMMVKI* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0024 329 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 156 255 - -
Amo16g0024 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 147 IPR027417 -
Amo16g0024 329 Gene3D - 31 294 IPR027417 -
Amo16g0024 329 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 300 IPR039657 -
Amo16g0024 329 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 27 300 - -
Amo16g0024 329 Pfam IPP transferase 144 242 - -
Amo16g0024 329 Pfam IPP transferase 67 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0024 Amo-Chr16 427570 428634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0024 142 298 C2H2 Transcription Factor Family AT2G27760 28.962 2.68e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0024 K10760 - gmx:100777757 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0024 16 427570 428634 Amo16g0024 16 427570 428634 ECH
Amo16g0024 16 427570 428634 Amo06g0465 06 6488410 6489366 hybridization