Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0009 ATGCCAAGCTGTAGCAGGGTTCAAAGCATGCTGCAGGCTGCGGTTCAATCACTTCACTGGACTTACACCATCTTTTGGCAACTCTCTCCACAACAAAGGAGGACAGTTGAAGCAATAGAGGCTAACAAGAGTAGTAGTAATAATGAGGAGGCGTCTCTCCAGAGAAGCAACCAGCTTAGAGACCTCTATGACTTACTATTGTCTGATCGCCATGGAGACCACGTCTTCGCTGTTGATCCTCCGGCAACTCCGCGTCCTTCCACCGCTTTGTCGCCGGAGGATCTTAGCGAATCCGAATGGTTGCCGGGAAAGGCATATGCGAGGAGGCAGCATGTTTGGCTCCAAGGTGCAAACGAAACGGACACCAAGACATTTTCAAGAGCAATTCTTGCCAAGACAGTGGTGTGCATTCCAATGTTGGATGGCGTCGTTGAAGTCGGCACCATTGATAAGGTAAAAGAAGACATCAACGTAATCAAACATGTAAAGAGCTTCTTCATAGGAGATCACCACCGTCCCCAACCAAAGCATGCCCTATCTGAAAACTCTGCCTCCAATCCCATTACAGAAGAAGCTCAATTATTATTGGATTCAGAAACAGCAACCCTCCCACAAAGCAAGCTTAAGGAGCCGGTCGTGGCAGAGGACGGTAGCCGAGCCGGATCGCCGGATGATGGCTCCAATCGGCTGAACTCAGCCGGTGTTCTTTGTCAAATTATAGTTTTCAATTTTCTAAAGTATATTTCATGTTCCATCGTGTCAGAACTACTACATGGTGATGAGTATGATAATAACTCAGAGGCCGAGACATCTCACCTATGTACGGAGCAAGAAGGCCACACACACTACTCTAAAACGGTGTCCACCATCCTTGAAGGCAGCTCCGGCCATCGGCCGGATGCTGTTTGCGGCTTATTGTCCTTCCAATCAGCTTTTGCCACGTGGAGCAGCCGTGCTTATAACTGCCACCAGGTGACGGTGGTTGAAAACCCCCAACGGCTCCTCAAGAACATATTGTTTAGGGTTCCATACTTGCATCGCAAGCAAAACCGCCACAATTCAGCAGAAACCCTAGAACAATTGGAAAGAACGATAATGCCTTCTCCACAAGATGACCTAATCAGCAGCCACGTGGCAGCGGAGCGGCGGCGTCGCGAAAAGCTGAACGAGAAGTTCATCACGTTAAGGTCGTTGGTACCATATGTGACGAAAATGGACAAGGCTTCTATATTAGGAGACACAATTGAGTACGTGAAACAGTTGCACGAGAAGGTGAAGAAGCTGGAGGAGGAAGATCAACGGCGGAGAAGTGGAAAGAAGAGGAAGGAGAGGGCGGTGGAGGTTTCGGTGATAGAGGGTGAGATTTTGTTGGAGGTGGAGTGTATGAATAGGGAAGGGTTGTTGCTTGATTTGATGAGAACATTGAAGGAGGTGGGAATAGAGGTGAGAGGGGTAAAATCGTCATTTAAGGGTGATGATGAAAGGGTGTTTGTGGTGGAGTTAAGAGGCAAGGTGAAAGAAAATGGAAAAAGGAATAATAATAATAAGAAGAATAAGAAGATTAGCATCGTGGAAGTGAAGAAGGTCCTTCATAACATTATAAACCCTCATCATCATCCACTATAA 1626 0.4717 MPSCSRVQSMLQAAVQSLHWTYTIFWQLSPQQRRTVEAIEANKSSSNNEEASLQRSNQLRDLYDLLLSDRHGDHVFAVDPPATPRPSTALSPEDLSESEWLPGKAYARRQHVWLQGANETDTKTFSRAILAKTVVCIPMLDGVVEVGTIDKVKEDINVIKHVKSFFIGDHHRPQPKHALSENSASNPITEEAQLLLDSETATLPQSKLKEPVVAEDGSRAGSPDDGSNRLNSAGVLCQIIVFNFLKYISCSIVSELLHGDEYDNNSEAETSHLCTEQEGHTHYSKTVSTILEGSSGHRPDAVCGLLSFQSAFATWSSRAYNCHQVTVVENPQRLLKNILFRVPYLHRKQNRHNSAETLEQLERTIMPSPQDDLISSHVAAERRRREKLNEKFITLRSLVPYVTKMDKASILGDTIEYVKQLHEKVKKLEEEDQRRRSGKKRKERAVEVSVIEGEILLEVECMNREGLLLDLMRTLKEVGIEVRGVKSSFKGDDERVFVVELRGKVKENGKRNNNNKKNKKISIVEVKKVLHNIINPHHHPL* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0009 541 Gene3D - 374 445 IPR036638 GO:0046983
Amo16g0009 541 SMART finulus 378 427 IPR011598 GO:0046983
Amo16g0009 541 Coils Coil 411 431 - -
Amo16g0009 541 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 166 IPR025610 -
Amo16g0009 541 Pfam Helix-loop-helix DNA-binding domain 376 422 IPR011598 GO:0046983
Amo16g0009 541 PANTHER TRANSCRIPTION FACTOR TT8 7 535 - -
Amo16g0009 541 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 421 IPR011598 GO:0046983
Amo16g0009 541 MobiDBLite consensus disorder prediction 206 227 - -
Amo16g0009 541 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 434 IPR036638 GO:0046983
Amo16g0009 541 PANTHER TRANSCRIPTION FACTOR TT8 7 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0009 Amo-Chr16 286091 293964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0009 7 534 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.559 3.43e-114 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g0009 bHLH-MYC_N 1.8e-26 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0009 - - aprc:113862120 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0009 16 286091 293964 Amo16g0009 16 286091 293964 ECH