Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1876 ATGGCATCGTGTAGTAGAGTAGTTCATGAAATGGGATGCGGGAATGGTGATGATTCAGATCCAGATGGTGAAATGGCTACAAGGGCGGGCGATGACGAGGAAAAAATGCTTGACATAGGAGTGGAAGAGGATGAGTTTGAGGGTTTAATTTATAAGCAGAGTGAAGGCACTACCAACACGATATCTAATGCTGGACGGGTTACTGCGGCAGATGTACTTAAGATGGAGTTCAATAGTCCAGCGGAAGCAACTATTTTCTATGAAGAGTATAGTAGGGCAAAGGGATTTGCGATGCGACAAGGGAAGAAGTTGAAAAATAGGAATGGTGATTTTGTTCGTTACACGTATCTGTGTAATAGACAAGGGTTTAGAGACAAGAAGTGGCTAGAGAAGGTGGATCGGAAGAGGGAGCACAAGGTAGTGACTCGGTGCGGGTGTCCTGTGGAGATGCGTATTAAGCCTAAAGGGGATAGTGGGAGATGGTTTGTGTCTTTTTTTGTGGAGGAACATAACCATGAGCTCCTGCCTATGAAGTATGTGGACTATCTACCTGCACACCGTAAGATATCTGATGTTGATATTGCACACATGAAGAGCATGAGGCAAGTTGGGATATCAATTCCAAAGATCTATGAGTCCATTGCTGCACAGGCGGGAGGTTTTAATTTGGTTCCGTTTACAAAGCGAGATATGGACAATGAGGAAGAGCTTGACTTCCGATCATCGTACGGGACACCGGTGCTTCAAACACAGTTCCCGGAGTTAGAAAAGTCAGGGGCAATAAACTTCACACGGGAAATATTCTCAAGATATCGTGAGTCACTTAAAAGGTGTGTTCGGGTGACCATATTGGAGTGCATCGAGCGTGACGATAGGTGTGTGTATGTAACACAGAAGTATAGAAGACCGAATTCACGGTGGGATGTGGTTCATATGAAAGGGAAAGAGGAGTTTCTTTGCAGTTGCCTGAGGATGGAGTCATTTGGTTTGCCATGTGTTCACATTCTAGCAGTTTTGGTTAGGTTAGATATTGATTCCCTTCCTAAGAGTCTTGTGTTGGCGCGGTGGTCCAAAGCAGCGAAGGAAGATCTTTGTTACGAACCGTTAAGCAGCCGATATGGTGATGCGGGTGTTTTGTATCGGAGTAGAGTGGGTGCATTCCTCCAGCACTGCAAGCGGTTAGCAAAAGTAGCATGTGCAGTTGCTGGGAATGGAGCTGGCAACAGTGGGGGAGGGGTTAGGGATCCTATTAGTGTCAAGACGAAAGGCACAGGACGTGGTAATGAACCTCTTGGGTGTAGGGGTATCAAGCGGCGTAAGTGCAGCACATGCGGTTGTGTTGGTCATCGAAGGACCCGGTGTCCCAATGCTCCACCGACATCAGCACCCTCAACCCAGGTAGTACGTTACATTAAGCCACATTCAAATAAGATTCAGTGCAGCCCATGCGACATCTGCGGATATGTGGCCAAGGTGAATATGCGCTTACATAGACCGCATGGTTGTTACAATCCTAAAGCCAAAATACCAGAAATCTAG 1539 0.4646 MASCSRVVHEMGCGNGDDSDPDGEMATRAGDDEEKMLDIGVEEDEFEGLIYKQSEGTTNTISNAGRVTAADVLKMEFNSPAEATIFYEEYSRAKGFAMRQGKKLKNRNGDFVRYTYLCNRQGFRDKKWLEKVDRKREHKVVTRCGCPVEMRIKPKGDSGRWFVSFFVEEHNHELLPMKYVDYLPAHRKISDVDIAHMKSMRQVGISIPKIYESIAAQAGGFNLVPFTKRDMDNEEELDFRSSYGTPVLQTQFPELEKSGAINFTREIFSRYRESLKRCVRVTILECIERDDRCVYVTQKYRRPNSRWDVVHMKGKEEFLCSCLRMESFGLPCVHILAVLVRLDIDSLPKSLVLARWSKAAKEDLCYEPLSSRYGDAGVLYRSRVGAFLQHCKRLAKVACAVAGNGAGNSGGGVRDPISVKTKGTGRGNEPLGCRGIKRRKCSTCGCVGHRRTRCPNAPPTSAPSTQVVRYIKPHSNKIQCSPCDICGYVAKVNMRLHRPHGCYNPKAKIPEI* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1876 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 191 IPR031052 GO:0006355
Amo15g1876 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 234 367 IPR031052 GO:0006355
Amo15g1876 512 SMART 26again6 318 345 IPR006564 GO:0008270
Amo15g1876 512 Pfam SWIM zinc finger 320 340 IPR007527 GO:0008270
Amo15g1876 512 MobiDBLite consensus disorder prediction 13 33 - -
Amo15g1876 512 ProSiteProfiles Zinc finger SWIM-type profile. 308 343 IPR007527 GO:0008270
Amo15g1876 512 Pfam FAR1 DNA-binding domain 86 176 IPR004330 -
Amo15g1876 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 63 191 - -
Amo15g1876 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 234 367 - -
Amo15g1876 512 MobiDBLite consensus disorder prediction 11 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1876 Amo-Chr15 120625383 120629831 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo15g1876 FAR1 2.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1876 - - adu:107470612 450.669