Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1873 ATGGATTTGTTCGGCTCAAATGGAAATGACCACGAGGATTCTCTGCCGCCACCACCACCCGTCCCACCAGATGTTGTGCCTGCCAAAGCAGAGGAGGAGCTTCCTCCTGAGCCACCGAAGAAAACCCGGGTGCCAATAGCCAGGCGCGGTCTAGCTTCAAAGGGTCAGAAGCTGAGTCTGTTGACCAACCACTTCAAAGTGAATGTAAACAACACTGAAGGGGAATTCTACCAGTATAGTGTGGCTCTTTCTTATGAAGATGGTCGCCCTGTGGAAGGAAAGGGTGCTGGAAGGAAAGTGATAGACAAAGTTAAGGAAACTTATGACTCGGAGTTGAATGGGAAGGACTTCGCCTATGATGGTGAAAAAACTTTGTTCACTGTTGGATCTCTAGCTCGAAACAAGCTTGAGTTTACCGTTGTTCTTGAGGATGTTACCTCAAACAGAAACAATGGAAACTGCAGCCCTGAAGGTCATGGAAGTCCCAACGAAGGTGATAGGAAGAGAGTGAGGCGCCCATACCGTGCCAAAACATTCAAAGTTGAGATTAGCTTTGCCGCCAAAATTCCAATGAAAGCCATTACCAATGCTTTACGCGGGCAAGAAACTGAGAATTATCAAGAAGCCATCAGAGTTCTTGATATCATCCTGAGGCAACATGCTGCCAAGCAAGGATGCTTGCTTGTGCGCCAATCCTATTTCCACAATGACCCAAAGAATTTTGCTGATGTAGGAGGGGGGGTTCTCGGTTGCCGAGGCTTCCATTCTAGTTTTAGAACCACTCAGAGTGGCCTGTCACTCAATATAGATGTTTCAACTACCATGATTATTACTCCTGGTCCTGTGGTGGACTTTTTAATTGCCAATCAGAATGTGAGAGATCCCTATTCGCTTGACTGGGCAAAGGCCAAGAGGACACTTAAAAATCTGAGGATTAGAACTAGTCCGTCCAATCAGGAGTTCAAGATTACTGGTCTCAGTGAACTCCCATGCAAAGAGCAGACTTTTACTCTGAAGACCAGAGGTGGAGCAGATGGCGAAGATACTACGGAAGTGACTGTTTATGACTATTTTGTTAAACAACGCAATATAGAGCTCCGCTACTCTGGTGATCTTCCTTGTATCAATGTGGGAAAGCCGAAACGTCCAACATATTTCCCCATTGAGCTTTGCGATTTGGTATCCCTGCAACGGTACACGAAAGCACTTTCAACACTTCAAAGGGCTTCTCTGGTCGAGAAATCCAGGCAAAAACCACAGGAGAGGATGAGGGTGTTGAATGATGCCCTCAAAACCAGCAACTATGCTTCTGAACCCATGTTGCGTAGCTGTGGTATTCAAATAAACAATAGTTTCACTCCAGTTGAAGGACGTGTTTTGCAAGCTCCAAGGCTGAAATTTGGGAATGGAGAGGACTTCAATCCTAGGAATGGAAGGTGGAATTTTAACAATAAGAAAATTGTCCAACCAACAAAGATTGAGAGGTGGGCAGTTGTTAACTTCTCTGCTCGCTGTGATGTGAATGGGCTTATCAGGGACCTGATTAAATGTGGAGGAATGAAAGGAATTATGATTGATCAGCCTTTTGATGTATTTGAAGAACAAAATAGTAACAGACGTGCCCCTCCACTTGTCAGGGTGGAGAAAATGTTTGAATTGATTCAGTCTAGACTTCCTGGGGCCCCTCAGTTCCTGCTTTGTCTTCTTCCAGAGCGGAAAAACTCTGATCTTTATGGTCCTTGGAAGAAGAAGAACCTTGCTGACTTTGGAATCGTTACCCAGTGCATTGCTCCAACAAGGGTCAATGATCAGTATTTGACCAATGTTTTGTTGAAAATAAATGCAAAGCTTGGTGGGTTGAATTCTTTGCTAGGTGTGGAGCACTCCCCTTCTATTCCTATTGTTTCAAAAGCTCCTACACTCATTCTTGGCATGGATGTGTCCCACGGCTCCCCAGGGCAATCTGATATTCCATCAATTGCTGCGGTGGTGAGCTCTAGACAATGGCCACTGATATCTAAGTACAGGGCATGTGTTCGAACACAGTCTCCCAAGGTCGAAATGATTGACAATTTATTTAAGAAAGTATCTGATAAAGATGATGAAGGAATAATCAGGGAACTTCTCATTGACTTCTATTCAAGTTCCGGAAAGAGGAAACCTGATAATATAATTATATTCAGGGATGGTGTTAGCGAGTCTCAATTCAATCAAGTTTTGAACAAAGAACTTGATCAAATCATTCAGGCCTGCAAATTTTTGGATGAGAACTGGGATCCCAAGTTTTTGGTGATGGTTGCTCAGAAGAATCACCATACCAAGTTTTTCCAGCCGGGATCACCTGACAATGTTCCTCCTGGAACGGTTATTGATAACAAAATTTGTCACCCTCGGAACTATGATTTTTACATGTGTGCCCATGCTGGAATGATTGGTACTACCAGGCCTACTCACTACCATGTGCTGTTAGATGAGATTGGTTTCTCTCCAGATGATCTTCAGGAACTTGTTCATTCTCTTTCCTATGTGTATCAGAGGAGTACCACTGCCATCTCTGTTGTTGCTCCAATATGCTATGCTCACCTGGCTGCAACTCAGATGGGACAGTTCATGAAATTTGAGGACAAATCTGAGACCTCATCAAGCCATGGTGGACTCACTGCTGCTGGAGCTGTTCCTGTCCCTCAGTTGCCCAAATTGCAGGAGAGTGTTTGCAACTCCATGTTCTTTTGTTAG 2736 0.4437 MDLFGSNGNDHEDSLPPPPPVPPDVVPAKAEEELPPEPPKKTRVPIARRGLASKGQKLSLLTNHFKVNVNNTEGEFYQYSVALSYEDGRPVEGKGAGRKVIDKVKETYDSELNGKDFAYDGEKTLFTVGSLARNKLEFTVVLEDVTSNRNNGNCSPEGHGSPNEGDRKRVRRPYRAKTFKVEISFAAKIPMKAITNALRGQETENYQEAIRVLDIILRQHAAKQGCLLVRQSYFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLIANQNVRDPYSLDWAKAKRTLKNLRIRTSPSNQEFKITGLSELPCKEQTFTLKTRGGADGEDTTEVTVYDYFVKQRNIELRYSGDLPCINVGKPKRPTYFPIELCDLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLNDALKTSNYASEPMLRSCGIQINNSFTPVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPTKIERWAVVNFSARCDVNGLIRDLIKCGGMKGIMIDQPFDVFEEQNSNRRAPPLVRVEKMFELIQSRLPGAPQFLLCLLPERKNSDLYGPWKKKNLADFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKKVSDKDDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNKELDQIIQACKFLDENWDPKFLVMVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTTRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGLTAAGAVPVPQLPKLQESVCNSMFFC* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1873 911 Pfam PAZ domain 283 411 IPR003100 GO:0005515
Amo15g1873 911 Pfam Argonaute linker 1 domain 229 277 IPR014811 -
Amo15g1873 911 Coils Coil 737 757 - -
Amo15g1873 911 Pfam N-terminal domain of argonaute 57 217 IPR032474 -
Amo15g1873 911 SUPERFAMILY Ribonuclease H-like 548 870 IPR012337 -
Amo15g1873 911 MobiDBLite consensus disorder prediction 1 43 - -
Amo15g1873 911 Gene3D - 631 911 IPR036397 GO:0003676
Amo15g1873 911 Gene3D paz domain 273 399 - -
Amo15g1873 911 Pfam Argonaute linker 2 domain 421 467 IPR032472 -
Amo15g1873 911 ProSiteProfiles PAZ domain profile. 304 395 IPR003100 GO:0005515
Amo15g1873 911 ProSiteProfiles Piwi domain profile. 564 872 IPR003165 GO:0003676
Amo15g1873 911 MobiDBLite consensus disorder prediction 149 172 - -
Amo15g1873 911 Gene3D - 459 625 - -
Amo15g1873 911 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 910 - -
Amo15g1873 911 Pfam Piwi domain 565 872 IPR003165 GO:0003676
Amo15g1873 911 SUPERFAMILY PAZ domain 274 435 IPR036085 GO:0005515
Amo15g1873 911 SMART DUF1785_2 227 279 IPR014811 -
Amo15g1873 911 SMART Piwi_a_2 564 872 IPR003165 GO:0003676
Amo15g1873 911 CDD PAZ_argonaute_like 279 394 - -
Amo15g1873 911 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 910 - -
Amo15g1873 911 CDD Piwi_ago-like 439 866 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1873 Amo-Chr15 120594923 120603004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1873 48 911 Eukaryotic Initiation Factors Gene Family AT5G43810 34.961 3.56e-160 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1873 K11593 - gmx:100779439 1570.06