Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1836 ATGGGTGGGAATTCACCGTGTGCCTCATGCAAGCTTCTGAGACGCAGGTGCACCAAAGATTGTGCATTTGCTCCTTATTTCCCTGCTGATGAACCCCACAAGTTTGCCATAGTCCACAAAGTTTTTGGCGCTAGCAACGTTAGCAAAATGTTGCAGGAACTTCCGGTGGAGCAAAGAGCAGATGCAGTGAGCAGCCTAGTGTACGAGGCGAATGCGAGGGTCCGGGATCCGGTGTACGGGTGTGTCGGAGCCATATCATACCTTCAAAACCAAGTCTCAGAGCTTCAAATGCAGCTAGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGCAGCAGCAAGTAGAAGAAGATCCACCAGTGATGATGATGATGATGCCACCACCTCAACTCTCAAATGAAAATGAACTCTCTCATCATCACTACTTCACTACTTTTGGATCTTCTTCTACCAATAATGTAATTCATGATTCCTTCAAGAGACAAAGTGTTTTTGGACATGACATGGTTTCTTGA 516 0.4632 MGGNSPCASCKLLRRRCTKDCAFAPYFPADEPHKFAIVHKVFGASNVSKMLQELPVEQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQQVEEDPPVMMMMMPPPQLSNENELSHHHYFTTFGSSSTNNVIHDSFKRQSVFGHDMVS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1836 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 128 - -
Amo15g1836 171 Coils Coil 85 105 - -
Amo15g1836 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Amo15g1836 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Amo15g1836 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1836 Amo-Chr15 120053774 120054981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1836 3 114 AS2 family AT2G30130 90.179 3.46e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo15g1836 LOB 8.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1836 - - cit:102614863 256.529