Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1818 ATGGAAAACTACTACTATTCTGGATGGCCTCAATCTCAATGCAACAACTCTGCACCAAACAGTAACAATAATTCTTCCTTTTCAGTACCAACACAGATAGTGCCTCATGCCTATGACTCAGCCTTTGCCTCTCTTCAATTCCAATATCCATGGCCTTTAGCCTTTGAAGGGTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTCATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTRAAGGATCTAAAGYGAAAAGCRATGGATGTGAGCAAAAGCATCACAGTTCCAAGTGAAACTGATGAAGTAACAATAATAGAGTGTGACCCTGATCAAGATGAAAGCTATGCTAAAGTGAAGATACTGAAGCACAACATTGTAATTTCAGTTTGCTGTGATGATAGACCAGAACTTTTCAATGAACTCATTCAAGTCTTAAAAGGGTTGAGGCTCACAGCAGTTAAAGCTGACATAGCAAGTGTTGGTGGCAGAATCAAGAGCATATTGGTGCTATGCTCTAAGGAAAATGAAGAAGGTGGTGATGGTGTTTGCCTTAACACTCTCAAACAATCACTGAAATCTGCTGTTAACAAAATTGCTTCATCATCCATGACATCAAATTGTCCCACAAGAAGTAAGAGGCAAAGGTTCTTCTTGCCTTCACATTTCATACAGTGA 771 0.4021 MENYYYSGWPQSQCNNSAPNSNNNSSFSVPTQIVPHAYDSAFASLQFQYPWPLAFEGFPEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKXKAMDVSKSITVPSETDEVTIIECDPDQDESYAKVKILKHNIVISVCCDDRPELFNELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKENEEGGDGVCLNTLKQSLKSAVNKIASSSMTSNCPTRSKRQRFFLPSHFIQ* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1818 256 SMART finulus 71 120 IPR011598 GO:0046983
Amo15g1818 256 PANTHER TRANSCRIPTION FACTOR BHLH51 24 254 - -
Amo15g1818 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 117 IPR036638 GO:0046983
Amo15g1818 256 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983
Amo15g1818 256 Gene3D - 60 123 IPR036638 GO:0046983
Amo15g1818 256 CDD ACT_UUR-ACR-like 158 195 - -
Amo15g1818 256 CDD bHLH_AtAIG1_like 60 137 - -
Amo15g1818 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Amo15g1818 256 PANTHER TRANSCRIPTION FACTOR BHLH30 24 254 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1818 Amo-Chr15 119690561 119692543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1818 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.075 9.85e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo15g1818 HLH 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1818 - - gmx:100799687 337.421