Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1786 ATGGACCCATCCTCGATCCCTCCACCAGCAGGTCCGGCCACCAACACCCTCCCCATGCCAACCATCCCCGCCACCGTGCCCTTCCTCCAGGAGCCGAACAACCACTCTCCTCCGCCGCCGGCCACCACCGGAACGAACGCTGCTCCCAGCCACCCTCCCTACGCCGAGATGATATACACGGCAATCGAAGCGCTGAAGGAGAAAGAGGGTTCGAGCAAGAGAGCGATAGCGAAGTACATAGAGCAAGTGTACAAGGAGCAGTTACCACCAACTCACTCGACTTTGCTCACTCACCACCTCAACCGACTCAAGAACAACGGCATGCTTCAAATGGTCAAGAAATCATATAAGCTTCCTAGATCTGCTGACGCTACCGACCCTAACCCCTCTCCTTCTGGGTCCTCCAGGCCCAGGGGCCGCCCTCGTAAGGCCCAGATTCAGCCCCAGCCCCAATCACAGCTCCCCCAGCTTGAGGCACAGCCTCAGCCACAGCTGGCTGGGAATGTTAATGTTAATGTCCCTCAGCAGCAGCAGAATGCTGAGCCTGTGTGGGCCGCGCTAGGGCTTGCAGATGAGCCTGCGGTGCAGCCTGGCTCGGAGCTGAAGAAGAGGCCAGGTCGTCCGAAGAAGAATGAGGTTGCACCAGGTGCTGCGGAGACGCCAAATCCAAGCCTGGCTGTTGCTACGCCGGGTCGGAGAGGGCGTCCTCCGGGCTCGAAGAACTCGAAGAGGAAGCCTGGTCGTCCTCCGAAGGCTTCGCCTGCTGGTGGTCCAGCTGCTGCTGCTGTGGCGGATGCTGCGGCTTCTGGCGGGCCTAAGAGGCGTCCGGGCCGACCGGCCAAGAATCAGCAAGTGGCGACTCCTGTTACGTTTGCTGCTGTTTCTGATCCAGACGCCGCTGTGACTGCATTGCCGCCGGCTCCCGTGGTTGTGCCTGCCGGTGGTGTTCCTGTTGGGTCTCCCAGGGCCAGGGGACGCCCGAAGAGGATTCTTGGTGATGCTGTCACGGGGGCTATAATTCCTGTTGCTGTCGGTGCCACTGGCCGCGAAAGGGGCCGCGGACGTGGACGCGGACGCGGTCACGGCTTCGGTACCTTCGGACGTGGACGTGGTCGCGGGCGTGGAAGGCCAGTTGGCCGCCCGAGGAAGGATATAATATTGGCGGGTACTTCACAAAATGTTCAAAATGAAGATCTCCGGAGGAAGCTTGAACACTTCCAAGCAAAAGTGAAGGAATCTCTGGCAGTGCTTAGGCCTTACTTCAACCATGAAAGTCCAGTGACTGCACTTGCAGCACTCCAAGAATTGGATGTACTGGGAACTATGGACCTCAATGCACCCCTAAGGGATGAAACTATTCCTCAACAACCACAGCAGCAGCTGCCTCTGCAGCAGCAGCCGCCACCAATGCAGCCGTCGCCATCACCACCGCCGCCTCAACAGCAGCATCAACAGCACCAGCAGCTGCCACAACCACAGCTCATGTTCCCACAGCAATTCCACCAGTTTAACCTGCCGCAGTTCCAGCAGCCACCGCAGTATCAGCACCAACACCAGCCCCCACCCCAGCAGCAACTGTTCCATCCATAG 1590 0.5925 MDPSSIPPPAGPATNTLPMPTIPATVPFLQEPNNHSPPPPATTGTNAAPSHPPYAEMIYTAIEALKEKEGSSKRAIAKYIEQVYKEQLPPTHSTLLTHHLNRLKNNGMLQMVKKSYKLPRSADATDPNPSPSGSSRPRGRPRKAQIQPQPQSQLPQLEAQPQPQLAGNVNVNVPQQQQNAEPVWAALGLADEPAVQPGSELKKRPGRPKKNEVAPGAAETPNPSLAVATPGRRGRPPGSKNSKRKPGRPPKASPAGGPAAAAVADAAASGGPKRRPGRPAKNQQVATPVTFAAVSDPDAAVTALPPAPVVVPAGGVPVGSPRARGRPKRILGDAVTGAIIPVAVGATGRERGRGRGRGRGHGFGTFGRGRGRGRGRPVGRPRKDIILAGTSQNVQNEDLRRKLEHFQAKVKESLAVLRPYFNHESPVTALAALQELDVLGTMDLNAPLRDETIPQQPQQQLPLQQQPPPMQPSPSPPPPQQQHQQHQQLPQPQLMFPQQFHQFNLPQFQQPPQYQHQHQPPPQQQLFHP* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1786 529 Gene3D - 46 128 IPR036388 -
Amo15g1786 529 PANTHER HISTONE H1-LIKE 346 458 - -
Amo15g1786 529 PANTHER HISTONE H1-LIKE 33 340 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 1 52 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 119 287 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 457 529 - -
Amo15g1786 529 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Amo15g1786 529 PRINTS AT-hook-like domain signature 271 282 IPR017956 GO:0003677
Amo15g1786 529 PRINTS AT-hook-like domain signature 319 329 IPR017956 GO:0003677
Amo15g1786 529 MobiDBLite consensus disorder prediction 1 16 - -
Amo15g1786 529 Pfam linker histone H1 and H5 family 51 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo15g1786 529 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo15g1786 529 PRINTS Histone H5 signature 37 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo15g1786 529 PRINTS Histone H5 signature 64 81 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo15g1786 529 PRINTS Histone H5 signature 198 217 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo15g1786 529 PANTHER HISTONE H1 33 340 - -
Amo15g1786 529 PANTHER HISTONE H1 346 458 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 145 182 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 32 46 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 484 529 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 348 384 - -
Amo15g1786 529 CDD H15 48 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo15g1786 529 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo15g1786 529 SUPERFAMILY "Winged helix" DNA-binding domain 48 122 IPR036390 -
Amo15g1786 529 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Amo15g1786 529 SMART AT_hook_2 352 364 IPR017956 GO:0003677
Amo15g1786 529 SMART AT_hook_2 321 333 IPR017956 GO:0003677
Amo15g1786 529 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Amo15g1786 529 SMART AT_hook_2 230 242 IPR017956 GO:0003677
Amo15g1786 529 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Amo15g1786 529 SMART AT_hook_2 243 255 IPR017956 GO:0003677
Amo15g1786 529 SMART AT_hook_2 371 383 IPR017956 GO:0003677
Amo15g1786 529 MobiDBLite consensus disorder prediction 461 483 - -
Amo15g1786 529 MobiDBLite consensus disorder prediction 307 327 - -
Amo15g1786 529 Coils Coil 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1786 Amo-Chr15 118819752 118827827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1786 41 169 Single Myb Histone (SMH) Gene Family AT1G49950 28.369 5.64e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1786 - - lang:109358509 365.155