LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1779	ATGGGTATCAAGGATCTCCTGAAATTTATGAAGCCTTACACCGAACCTATCCACATAAAAAAGTACGCTGGCAAACGAGTGGGTATCGATGCATACTCATGGCTTCACAAGGGTGCTTATTCATGTAGTATGGAGCTTTGTCTAGATTCTGATAGTGAAAAGAAATTGCGGTACATTGAGTACTTTATGCATCGAGTGAACCTTCTTCGCTACTATAAAATAACACCGGTTGTTGTCTTTGATGGTGGCAATGTTCCTTGCAAAGCAGCAACTGAGCAAGAGAGGAATAAAAAAAGAAGTGCTAATCGTGAATTGGCAATGGCCAAGCTCAAAGAAGGAAATGTTATTGCAGCTTCAGAACTCTTCCAGAGAGCAGTTAACATTACTCCCCTGATGGCATATCAATTAATTCAGACTCTGAGATCAGAGAGCATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACATGTCCAATCTTGAAGTAGAAAAGGGTGGAATTGCTGCAGTGATCACAGAAGATAGTGATTTGATAGCTTATGGTTGTCCAGCTATTATTTTTAAGATGGACCGTGATGGGAATGGCGAAAGAATTGAGATAGAGAAGGTTTTTTGTGCCAAGTCCAGTAGACCTTCATTTCGGAATTTTGACATGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCCTTAGTGTCCAAGTATAAGAACCTAGATCGTGTTTTGTCAGTTCTTAAGTTTGAGAAGGGTGATCAAATGCCTGAAGATTATGCAAAATCCTTCAAAGAGGCAATTGCAGTCTTTCAGCATGCTCGAATATATGATGCCAATGCTAAAGAGCTTAAGCACATGAAGCCTCTTCCCCAAGGTTTTCTTGAATCACTCGATGGAACCCTTGATTTCTTGGGACCAGAAATTCCATCAACTATAGTCACTGCAATAGCTGAAGGAGACTTAAACCCATCAACTAAGGAAGCCTTTGATAAGTCTGAAAGTCCTGGACTTTCTCTTAACCGTATCGCAGTCAAAAGCATTGGTCAAATAAAGAAAGTTGAGGTTCCAAAACAACTTACCAAGGAAAACTGCTTCTCAATCTTTGTCTCCCAAAACACCACTGAAAATAATACAGGCAAGTCATTGACAAGAGAAGAGTTGATCTCAGATAAAGAAAGACATTCAGTTGAAGAATTGGCACTTGAGAAACTAATCATGCCACTGGAAACAAATGAAACAATTGAAAAGACCATTATATTTGATGACACTCCTTTGAAGGTTCCTAACAACAACCCATTCAAGATAATGAAAACTGAGGAAACATCTTTTTCTGTTCAGACAGATAATAAAACCACATTTGAAAAGGTTTCTATTGCAAGCAATGAGGAATACATTGACTTGTGCACACCCCCAGATAGTTTTGAAGAAGAAAAGGAGTCTCAGAATCTCTCAAGAAAAAGGGAATTTCAGAACATTTGCTCAGATGAACCGGTCTCAGGAGTGACTCAAGAAGAACTAGATTCAGATGTTGTTTGCTTGAATGTGGAATCACAAGGGAGTGTGAATTCTAAGACAAGCATGAAAAATGGTTCAGGATCAAAAGGAAGATGTGGAAGAGAAAAACAATCAAAGAGAGGCAAGTTCAAGCAGGCTTTGACCGGGAATAGAACTATTTTGAGTTTCTTTTCTAGAGTGTAA	1752	0.3927	MGIKDLLKFMKPYTEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSEKKLRYIEYFMHRVNLLRYYKITPVVVFDGGNVPCKAATEQERNKKRSANRELAMAKLKEGNVIAASELFQRAVNITPLMAYQLIQTLRSESIEFVVAPYEADAQLAYMSNLEVEKGGIAAVITEDSDLIAYGCPAIIFKMDRDGNGERIEIEKVFCAKSSRPSFRNFDMKLFTGMCVLAGCDFLPSVPGIGIARAHALVSKYKNLDRVLSVLKFEKGDQMPEDYAKSFKEAIAVFQHARIYDANAKELKHMKPLPQGFLESLDGTLDFLGPEIPSTIVTAIAEGDLNPSTKEAFDKSESPGLSLNRIAVKSIGQIKKVEVPKQLTKENCFSIFVSQNTTENNTGKSLTREELISDKERHSVEELALEKLIMPLETNETIEKTIIFDDTPLKVPNNNPFKIMKTEETSFSVQTDNKTTFEKVSIASNEEYIDLCTPPDSFEEEKESQNLSRKREFQNICSDEPVSGVTQEELDSDVVCLNVESQGSVNSKTSMKNGSGSKGRCGREKQSKRGKFKQALTGNRTILSFFSRV*	584

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1779	583	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	140	157	IPR006084	-
	Amo15g1779	583	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	76	95	IPR006084	-
	Amo15g1779	583	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Amo15g1779	583	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	225	240	IPR006084	-
	Amo15g1779	583	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	220	349	IPR036279	-
	Amo15g1779	583	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	568	IPR006084	-
	Amo15g1779	583	Gene3D	-	1	212	-	-
	Amo15g1779	583	MobiDBLite	consensus disorder prediction	539	563	-	-
	Amo15g1779	583	PANTHER	5'-3' EXONUCLEASE FAMILY PROTEIN	1	568	-	-
	Amo15g1779	583	SMART	HhH_4	222	255	IPR008918	GO:0003677\|GO:0003824

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1779	Amo-Chr15	118637101	118641547	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1779	1	315	Core DNA Replication Machinery Family	AT5G26680	24.847	1.94e-15	77.0

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g1779	K10746		-	gmx:100817932	791.186

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