Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1779 ATGGGTATCAAGGATCTCCTGAAATTTATGAAGCCTTACACCGAACCTATCCACATAAAAAAGTACGCTGGCAAACGAGTGGGTATCGATGCATACTCATGGCTTCACAAGGGTGCTTATTCATGTAGTATGGAGCTTTGTCTAGATTCTGATAGTGAAAAGAAATTGCGGTACATTGAGTACTTTATGCATCGAGTGAACCTTCTTCGCTACTATAAAATAACACCGGTTGTTGTCTTTGATGGTGGCAATGTTCCTTGCAAAGCAGCAACTGAGCAAGAGAGGAATAAAAAAAGAAGTGCTAATCGTGAATTGGCAATGGCCAAGCTCAAAGAAGGAAATGTTATTGCAGCTTCAGAACTCTTCCAGAGAGCAGTTAACATTACTCCCCTGATGGCATATCAATTAATTCAGACTCTGAGATCAGAGAGCATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACATGTCCAATCTTGAAGTAGAAAAGGGTGGAATTGCTGCAGTGATCACAGAAGATAGTGATTTGATAGCTTATGGTTGTCCAGCTATTATTTTTAAGATGGACCGTGATGGGAATGGCGAAAGAATTGAGATAGAGAAGGTTTTTTGTGCCAAGTCCAGTAGACCTTCATTTCGGAATTTTGACATGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCCTTAGTGTCCAAGTATAAGAACCTAGATCGTGTTTTGTCAGTTCTTAAGTTTGAGAAGGGTGATCAAATGCCTGAAGATTATGCAAAATCCTTCAAAGAGGCAATTGCAGTCTTTCAGCATGCTCGAATATATGATGCCAATGCTAAAGAGCTTAAGCACATGAAGCCTCTTCCCCAAGGTTTTCTTGAATCACTCGATGGAACCCTTGATTTCTTGGGACCAGAAATTCCATCAACTATAGTCACTGCAATAGCTGAAGGAGACTTAAACCCATCAACTAAGGAAGCCTTTGATAAGTCTGAAAGTCCTGGACTTTCTCTTAACCGTATCGCAGTCAAAAGCATTGGTCAAATAAAGAAAGTTGAGGTTCCAAAACAACTTACCAAGGAAAACTGCTTCTCAATCTTTGTCTCCCAAAACACCACTGAAAATAATACAGGCAAGTCATTGACAAGAGAAGAGTTGATCTCAGATAAAGAAAGACATTCAGTTGAAGAATTGGCACTTGAGAAACTAATCATGCCACTGGAAACAAATGAAACAATTGAAAAGACCATTATATTTGATGACACTCCTTTGAAGGTTCCTAACAACAACCCATTCAAGATAATGAAAACTGAGGAAACATCTTTTTCTGTTCAGACAGATAATAAAACCACATTTGAAAAGGTTTCTATTGCAAGCAATGAGGAATACATTGACTTGTGCACACCCCCAGATAGTTTTGAAGAAGAAAAGGAGTCTCAGAATCTCTCAAGAAAAAGGGAATTTCAGAACATTTGCTCAGATGAACCGGTCTCAGGAGTGACTCAAGAAGAACTAGATTCAGATGTTGTTTGCTTGAATGTGGAATCACAAGGGAGTGTGAATTCTAAGACAAGCATGAAAAATGGTTCAGGATCAAAAGGAAGATGTGGAAGAGAAAAACAATCAAAGAGAGGCAAGTTCAAGCAGGCTTTGACCGGGAATAGAACTATTTTGAGTTTCTTTTCTAGAGTGTAA 1752 0.3927 MGIKDLLKFMKPYTEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSEKKLRYIEYFMHRVNLLRYYKITPVVVFDGGNVPCKAATEQERNKKRSANRELAMAKLKEGNVIAASELFQRAVNITPLMAYQLIQTLRSESIEFVVAPYEADAQLAYMSNLEVEKGGIAAVITEDSDLIAYGCPAIIFKMDRDGNGERIEIEKVFCAKSSRPSFRNFDMKLFTGMCVLAGCDFLPSVPGIGIARAHALVSKYKNLDRVLSVLKFEKGDQMPEDYAKSFKEAIAVFQHARIYDANAKELKHMKPLPQGFLESLDGTLDFLGPEIPSTIVTAIAEGDLNPSTKEAFDKSESPGLSLNRIAVKSIGQIKKVEVPKQLTKENCFSIFVSQNTTENNTGKSLTREELISDKERHSVEELALEKLIMPLETNETIEKTIIFDDTPLKVPNNNPFKIMKTEETSFSVQTDNKTTFEKVSIASNEEYIDLCTPPDSFEEEKESQNLSRKREFQNICSDEPVSGVTQEELDSDVVCLNVESQGSVNSKTSMKNGSGSKGRCGREKQSKRGKFKQALTGNRTILSFFSRV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1779 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Amo15g1779 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Amo15g1779 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Amo15g1779 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Amo15g1779 583 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Amo15g1779 583 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 568 IPR006084 -
Amo15g1779 583 Gene3D - 1 212 - -
Amo15g1779 583 MobiDBLite consensus disorder prediction 539 563 - -
Amo15g1779 583 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 568 - -
Amo15g1779 583 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Amo15g1779 583 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Amo15g1779 583 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Amo15g1779 583 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Amo15g1779 583 CDD H3TH_FEN1-like 225 295 - -
Amo15g1779 583 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Amo15g1779 583 Coils Coil 91 111 - -
Amo15g1779 583 Gene3D - 218 291 - -
Amo15g1779 583 SMART xpgn3 1 102 IPR006085 GO:0004518
Amo15g1779 583 SMART xpgineu 141 210 IPR006086 GO:0004518
Amo15g1779 583 Pfam XPG I-region 145 235 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1779 Amo-Chr15 118637101 118641547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1779 1 315 Core DNA Replication Machinery Family AT5G26680 24.847 1.94e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1779 K10746 - gmx:100817932 791.186