Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1772 ATGTCCTTCTCTGCACCCCTTCCAAATCTCAAGCAACAAAAGATCCTTCGAATCTCCATCCATTACAATGAGCCTCAAATGTACATTATAATCACCATTATCTTCTTGTTCTTCCTGGCTACTACTGTGGTATCTGTTAATCCAAAATTTGTGGCCTGCACACCTAGAAGCTGTGGAAATGGTCTAAACATTAAGTATCCATTCTGGATCCCTTACGAACAGGATTCATTTTGCGGCTATCCTCACTTTGAGATCACCTGCAAGAACAAGAATCCAATTCTCAAAGCATCCAATTATGACTTGCTAGAAAAGTGTCCTGCTCCCATGCACAACTACAGTTTTGATCAGTTACCATTTACTTATAGTTCTGAGAACAATAATCTCTCTTTCTTCTATAACTGTACCACAAAACCAATAGATTTCCCCATATATGAAGTAGATTGTGCTAAAAATGCTACTCATTATTCATTTGCGGTTTTTCATAAGGAGGTACTGGAGCACAAAAACTACTCCATGAATGTGTCAACTGAAATTTTGAAGATGGGATTTCTTTTAAACTGGACTTCACCTGATTGCCAATACTGTGAGAAAAGTGGTGGACGGTGTGGATTTGATGGTTATCAGTTTCTCTGTTTCTGCAAGGATAAGTCATACCTGAAAAGTTGTGGTGATGATGCAATACATCTCCGGACATGGATAGTCATTGTTATAGGTGCTACAGCAGCTGCAGTAATTGTAGGATTGTTGAGTATTTGTTGTTTTACCTACATGTCACCAGCATCGCAAGAAAAATCCTGCTTTCCAACAAAGGGTAACCAAGATATTGAAACTTTCTTAAAAAATCATGGAGTGTTAACTATAAAAAGATATAAATTCTCTGATGTGAAGAAAATGACCAACTCCTTCAAAGTTAAACTAGGACAAGGTGGTTTTGGTGTTGTATATAAAGGAAAGTTATCCAATGATTCCGATGTGGCAGTCAAAATGTTGAATCCATCCAAAGGAAATGGTGAAGAATTTATTAACGAGGTAGCTAGCATTAGTAGAACTTCTCATGTTAATGTTGTCGCCCTTCTTGGATTTTGCTTAGAAGGTCACAAGAAAGTTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGACAATTTTATTTACAAAAAGAACCCTAAGAATACACCACTCTTGAGTTGGGATAATTTATATCAAATTTCCATAGGGATTGCTAGAGGATTGGAGTATTTGCATAGAGGATGCAACATTCTTATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAAAACTTTTGTCCTAAGATATCAGATTTTGGACTAGCAAAGCTTTGTCCTAGAAAAGAAAGTCATATTTCAATGTCCGAAACTAGAGGAACAATAGGGTACATAGCTCCAGAAGTGTGGAACAGACAATTCGGTAGAGTTTCACATAAATCTGATGTTTATAGCTATGGAATGATGCTTCTAGAAATGGTAGGAATGAAGGAGAACATCCCTGCAAAGACAAGTCACACAAGTGAGATGTACTTCCCTGATTGGATATACAAAAGGCTTGATCAAGGAACTCAACTGGGACCTGATGATGATGGGGAAGTGGCCATAGAGGAAAATGATGTTGTTAAGAAAATGACAATGGTGGGTTTATGGTGCATTCAACCAATTCCAAATGACAGACCAACAATGAGTAGAGTTGTAGAAATGTTGGAGGGCAGCATGAATTCCCTGGAAATGCCACCAAGACCTGTCCTGTCTTCAATAAGAGTGGTAGTAGAATCTTCTTCTAATGTTGTATCGTTGGTAGAATCTTCTTCTGTTGTATCAGTTGTAGAATCTTCTACTAGTGTAACTTAG 1872 0.3734 MSFSAPLPNLKQQKILRISIHYNEPQMYIIITIIFLFFLATTVVSVNPKFVACTPRSCGNGLNIKYPFWIPYEQDSFCGYPHFEITCKNKNPILKASNYDLLEKCPAPMHNYSFDQLPFTYSSENNNLSFFYNCTTKPIDFPIYEVDCAKNATHYSFAVFHKEVLEHKNYSMNVSTEILKMGFLLNWTSPDCQYCEKSGGRCGFDGYQFLCFCKDKSYLKSCGDDAIHLRTWIVIVIGATAAAVIVGLLSICCFTYMSPASQEKSCFPTKGNQDIETFLKNHGVLTIKRYKFSDVKKMTNSFKVKLGQGGFGVVYKGKLSNDSDVAVKMLNPSKGNGEEFINEVASISRTSHVNVVALLGFCLEGHKKVLIYEFMSNGSLDNFIYKKNPKNTPLLSWDNLYQISIGIARGLEYLHRGCNILILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESHISMSETRGTIGYIAPEVWNRQFGRVSHKSDVYSYGMMLLEMVGMKENIPAKTSHTSEMYFPDWIYKRLDQGTQLGPDDDGEVAIEENDVVKKMTMVGLWCIQPIPNDRPTMSRVVEMLEGSMNSLEMPPRPVLSSIRVVVESSSNVVSLVESSSVVSVVESSTSVT* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1772 623 ProSiteProfiles Protein kinase domain profile. 300 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo15g1772 623 SMART serkin_6 300 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo15g1772 623 Gene3D Transferase(Phosphotransferase) domain 1 375 584 - -
Amo15g1772 623 CDD STKc_IRAK 306 577 - -
Amo15g1772 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Amo15g1772 623 PANTHER - 32 616 - -
Amo15g1772 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 616 IPR045874 GO:0004672
Amo15g1772 623 Pfam Wall-associated receptor kinase galacturonan-binding 53 98 IPR025287 GO:0030247
Amo15g1772 623 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Amo15g1772 623 Gene3D Phosphorylase Kinase; domain 1 266 374 - -
Amo15g1772 623 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Amo15g1772 623 Pfam Protein tyrosine and serine/threonine kinase 302 575 IPR001245 GO:0004672|GO:0006468
Amo15g1772 623 Pfam Wall-associated receptor kinase C-terminal 154 216 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1772 Amo-Chr15 118468255 118471047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1772 15 616 Receptor kinase-like Gene Family AT5G38260 38.880 1.61e-145 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo15g1772 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1772 - - pmum:103338836 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1772 15 118468255 118471047 Amo15g1772 15 118468255 118471047 ECH