Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1756 ATGGAAGAGAATCTACCTCCTGGATTCAGATTCCACCCAACAGATGAAGAGCTTATAACATATTATCTTACAAGAAAAGTCTCTGAAAATGGATTCACTTCTAAAGCTATTGCTGTTGTTGATCTCAACAAGTCTGAGCCTTGGGATCTTCCAGGTAAGGCAAGCATGGGTGAGAAGGAATGGTACTTCTTCAGTTTAAGAGATAGAAAGTATCCAACAGGACTAAGAACAAATAGGGCAACAGAATCAGGGTATTGGAAGACCACAGGCAAAGACAAAGAGATATTTCGTGGTGGGGTTTTGGTTGGAATGAAGAAAACCCTAGTCTTCTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTTGAGAACAAGAATCCCTTTAGAACTAAGGATGAATGGGTAGTGTGCAGGGTATTCCAAAAGAGCACAGCAGCGAAAAAACCGCCGCAACAAACATCATCCTCCCAACCTGAATCCCCATGTGATGACACAACCTCTTTGGTCAATGAATTTGGTGATGTTATTGAGTTTCCAAATCTAAACACCAACATTAATAATACCAATAATAATAATAATAATTCTTCATCATCATCCTCAAGTGCATTATTCCCTAACAACATTCTTATTTCAGGACAACACATTCATCATCACCATGACCTAACCAATAATAACAATAATAACAATGTTAACACAAACATGAACTTAGCAATGAATTGGCCACCATCAAGTGATCATAATGTTCCATGGCCTTCAGTAGGGTTGTTGAATCCAAGTATTTCATCAATGAATTCCTTGATTCTCAAGGCATTGCAGCTTAGGAATAATTATCAACAAAGAGAAGTTGCATCCACATTTGCACCATCATCATATATTATGCCTCATCATCAAGGAGTAGTAGTTCCTCATCAACAAGTTATTATTGGAACCAATAATGATGACCTAATAACAACTTCTTCAAATCTCATCAATGCTTCTTCTTCTTCTTCATCAAAAGTTTTGGAATGTATGCCACATCAGCAACAACAACAACAGGAGCAACCATTCAATTTGGACTCCCTTTGGTAA 1092 0.3791 MEENLPPGFRFHPTDEELITYYLTRKVSENGFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKNPFRTKDEWVVCRVFQKSTAAKKPPQQTSSSQPESPCDDTTSLVNEFGDVIEFPNLNTNINNTNNNNNNSSSSSSSALFPNNILISGQHIHHHHDLTNNNNNNNVNTNMNLAMNWPPSSDHNVPWPSVGLLNPSISSMNSLILKALQLRNNYQQREVASTFAPSSYIMPHHQGVVVPHQQVIIGTNNDDLITTSSNLINASSSSSSKVLECMPHQQQQQQEQPFNLDSLW* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1756 363 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Amo15g1756 363 SUPERFAMILY NAC domain 3 150 IPR036093 GO:0003677|GO:0006355
Amo15g1756 363 MobiDBLite consensus disorder prediction 153 174 - -
Amo15g1756 363 ProSiteProfiles NAC domain profile. 5 150 IPR003441 GO:0003677|GO:0006355
Amo15g1756 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 286 - -
Amo15g1756 363 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Amo15g1756 363 PANTHER BNACNNG63190D PROTEIN 2 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1756 Amo-Chr15 118037972 118041837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1756 1 363 NAC Transcription Factor Family AT3G18400 54.032 1.13e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo15g1756 NAM 7.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1756 - - aip:107644305 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1756 15 118037972 118041837 Amo15g1756 15 118037972 118041837 ECH