Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1750 ATGGCTAGCAAAAACCTAAGACTAAGATTTGAAAGAGGAGCAACAATCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGAGTCGGATCTAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCTATGGGGTAGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCTGCAACTCCTTAGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGAGGAATTCACTATGACACGAACATCTACCATTATCCCCACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAACATTTACCTATTTATATAACAGATCGTATGGCCTATATATATAAAAGGCGGATCAAATTTAACCGTAGTGATCATCGTTTATCTTATGAATCTTACCGATCAACAATTAATTACCAAAAATCCATATTTACATTTCAACTAATAAAAACTCCAATAAAAACAAATATATAA 519 0.3642 MASKNLRLRFERGATIGQVGNVGVNQKTLGRVGSKCWLGKRPVVRGVVMNPVDHPYGVVKGGPQLVEKNLQLLRVILHLEEEVEKGINIEEFTMTRTSTIIPTMIGHTIAIHNGKEHLPIYITDRMAYIYKRRIKFNRSDHRLSYESYRSTINYQKSIFTFQLIKTPIKTNI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1750 172 Pfam Ribosomal Proteins L2, C-terminal domain 11 57 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 Gene3D Ribosomal protein L2, domain 3 20 64 IPR014726 -
Amo15g1750 172 Gene3D 30s Ribosomal Protein S19; Chain A 65 144 IPR023575 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 PANTHER - 14 79 - -
Amo15g1750 172 PANTHER RIBOSOMAL PROTEIN L2 14 79 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 PRINTS Ribosomal protein S19 family signature 113 125 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 PRINTS Ribosomal protein S19 family signature 93 112 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 SMART Ribosomal_L2_C_2 1 72 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 SUPERFAMILY Translation proteins SH3-like domain 7 57 IPR008991 -
Amo15g1750 172 Pfam Ribosomal protein S19 92 126 IPR002222 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 ProSitePatterns Ribosomal protein L2 signature. 42 53 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo15g1750 172 SUPERFAMILY Ribosomal protein S19 88 128 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1750 Amo-Chr15 117959865 117960566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1750 14 57 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 45.283 5.34e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1750 K02886 - csin:14412516 115.931