Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1701 ATGTTAGCGAATAACTCTTCAGTAGCTCCAAGTTCAGAACCATTTTCTTGTGCTGATAATAATAATGGCACTCCGAGCAATAAAAGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCGCTGTCGCCAAAGACGTTATTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAGGGCTTCCAAAGGGACCAGAACCTGCAGATGCATCGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTAAAGAGGGAGACGCCGGTGGTCAGGAAGAGGGTCTTCGTGTGTCCGGAGCCTACTTGCCTGCACCACGACCCTTGTCACGCGCTCGGAGACCTTGTTGGGATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAACAGTGGGTCTGCGAGCGCTGCTCCAAGGGCTACGCGGTGCAGTCCGATTACAAGGCTCACCTCAAGACCTGCGGCACTCGCGGCCACTCTTGTGACTGCGGCCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGGAGGCTTAGGACAGAATCTCATCATAATCATAATCATAATCATCAACAACCACCAACTCCAACTGCATGTTTATCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGAAGTGAAACCAATTTCAGCACTGCTCCATGGCAACCAACATCATCAACAACAACAACAACACCAACAAGCCTTGTTGTGATCGCAAAACCAATAACAACAACAACAGAACCACCTTTCTTCAACAACACTAACCCTACCCCAATTCTAGCCACTGCTGAAACATTCCTATTCAAGAAGAGTAACACCAGCAACAAACTCCTTCACCCAAACTTGGATCTTCAACTCTCCACCACCACCACCACCACCATGATGATGAACAACAACAATTCGATCCCCAATGTTGATTTAACACTATCACCAAAGAGTGATAATAATCATCATCAGCAGCTTCAAAACCAGCAGCATTCAACACAGCTGCAACTCTCCATTGGTGGAACAACCTCGTCAGACATTAGCGAGAACAATAACAAGAACGACTCATCAAACAGGAACTCGTCACCGAAAGAGAGCATCAACAGCAGCAACGAGAACAAGCATGCGACAGCAACAAGCATGGCTTTACGGGTTCAAGAACAAGCGAGGGAGCAACTAAGGTTAGCCATGGCGGAGAAAGCGTACGCAGAAGAAGCAAGGAAACAAGCAAAGAGGCAGATAGAAATGGCGGAACAAGAGTTCAACAATGCAAAGAGGATAAGGCAACAAGCGCAAGCTGAACTCGACAAAGCTTGCGCTCTCAAGGAACATGCAATGAAGAAGATAAACTCAACCATCATGCAAATCACGTGCCATTCTTGCAAGCAACACTTTCATCTTCAACCACCACCAGTATCTGCTACAGCACCACCAGATGAAAATTCCTTGGTTCTCAGTTACATGTCTTCTGGAATCACCACCGAAGGTGCTGGAGAAGTTATAGAGAACAATAATAACGATCATGATACTACTACTACTACTATTACTGATAATAATAATAATAATGGGAAGAAAGCATCTACAGCTACTAACTCTTAG 1611 0.4674 MLANNSSVAPSSEPFSCADNNNGTPSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTESHHNHNHNHQQPPTPTACLSRTASSPSPSRSETNFSTAPWQPTSSTTTTTPTSLVVIAKPITTTTEPPFFNNTNPTPILATAETFLFKKSNTSNKLLHPNLDLQLSTTTTTTMMMNNNNSIPNVDLTLSPKSDNNHHQQLQNQQHSTQLQLSIGGTTSSDISENNNKNDSSNRNSSPKESINSSNENKHATATSMALRVQEQAREQLRLAMAEKAYAEEARKQAKRQIEMAEQEFNNAKRIRQQAQAELDKACALKEHAMKKINSTIMQITCHSCKQHFHLQPPPVSATAPPDENSLVLSYMSSGITTEGAGEVIENNNNDHDTTTTTITDNNNNNGKKASTATNS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1701 536 MobiDBLite consensus disorder prediction 190 241 - -
Amo15g1701 536 Gene3D Classic Zinc Finger 46 130 - -
Amo15g1701 536 PANTHER OS03G0310200 PROTEIN 1 498 IPR039288 GO:0009630
Amo15g1701 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Amo15g1701 536 MobiDBLite consensus disorder prediction 198 241 - -
Amo15g1701 536 Pfam Zinc-finger of C2H2 type 57 75 - -
Amo15g1701 536 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 498 - -
Amo15g1701 536 MobiDBLite consensus disorder prediction 306 383 - -
Amo15g1701 536 Coils Coil 397 452 - -
Amo15g1701 536 MobiDBLite consensus disorder prediction 506 536 - -
Amo15g1701 536 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Amo15g1701 536 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Amo15g1701 536 MobiDBLite consensus disorder prediction 1 44 - -
Amo15g1701 536 MobiDBLite consensus disorder prediction 1 29 - -
Amo15g1701 536 SMART c2h2final6 57 79 IPR013087 -
Amo15g1701 536 SMART c2h2final6 98 128 IPR013087 -
Amo15g1701 536 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1701 Amo-Chr15 116641979 116645431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1701 336 503 C2H2 Transcription Factor Family AT1G25250 44.048 4.09e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo15g1701 zf-met 0.031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1701 K25871 - gmx:100800187 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4379 05 114400894 114404350 Amo15g1701 15 116641979 116645431 hybridization