Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo15g1701 | ATGTTAGCGAATAACTCTTCAGTAGCTCCAAGTTCAGAACCATTTTCTTGTGCTGATAATAATAATGGCACTCCGAGCAATAAAAGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCGCTGTCGCCAAAGACGTTATTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAGGGCTTCCAAAGGGACCAGAACCTGCAGATGCATCGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTAAAGAGGGAGACGCCGGTGGTCAGGAAGAGGGTCTTCGTGTGTCCGGAGCCTACTTGCCTGCACCACGACCCTTGTCACGCGCTCGGAGACCTTGTTGGGATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAACAGTGGGTCTGCGAGCGCTGCTCCAAGGGCTACGCGGTGCAGTCCGATTACAAGGCTCACCTCAAGACCTGCGGCACTCGCGGCCACTCTTGTGACTGCGGCCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGGAGGCTTAGGACAGAATCTCATCATAATCATAATCATAATCATCAACAACCACCAACTCCAACTGCATGTTTATCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGAAGTGAAACCAATTTCAGCACTGCTCCATGGCAACCAACATCATCAACAACAACAACAACACCAACAAGCCTTGTTGTGATCGCAAAACCAATAACAACAACAACAGAACCACCTTTCTTCAACAACACTAACCCTACCCCAATTCTAGCCACTGCTGAAACATTCCTATTCAAGAAGAGTAACACCAGCAACAAACTCCTTCACCCAAACTTGGATCTTCAACTCTCCACCACCACCACCACCACCATGATGATGAACAACAACAATTCGATCCCCAATGTTGATTTAACACTATCACCAAAGAGTGATAATAATCATCATCAGCAGCTTCAAAACCAGCAGCATTCAACACAGCTGCAACTCTCCATTGGTGGAACAACCTCGTCAGACATTAGCGAGAACAATAACAAGAACGACTCATCAAACAGGAACTCGTCACCGAAAGAGAGCATCAACAGCAGCAACGAGAACAAGCATGCGACAGCAACAAGCATGGCTTTACGGGTTCAAGAACAAGCGAGGGAGCAACTAAGGTTAGCCATGGCGGAGAAAGCGTACGCAGAAGAAGCAAGGAAACAAGCAAAGAGGCAGATAGAAATGGCGGAACAAGAGTTCAACAATGCAAAGAGGATAAGGCAACAAGCGCAAGCTGAACTCGACAAAGCTTGCGCTCTCAAGGAACATGCAATGAAGAAGATAAACTCAACCATCATGCAAATCACGTGCCATTCTTGCAAGCAACACTTTCATCTTCAACCACCACCAGTATCTGCTACAGCACCACCAGATGAAAATTCCTTGGTTCTCAGTTACATGTCTTCTGGAATCACCACCGAAGGTGCTGGAGAAGTTATAGAGAACAATAATAACGATCATGATACTACTACTACTACTATTACTGATAATAATAATAATAATGGGAAGAAAGCATCTACAGCTACTAACTCTTAG | 1611 | 0.4674 | MLANNSSVAPSSEPFSCADNNNGTPSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTESHHNHNHNHQQPPTPTACLSRTASSPSPSRSETNFSTAPWQPTSSTTTTTPTSLVVIAKPITTTTEPPFFNNTNPTPILATAETFLFKKSNTSNKLLHPNLDLQLSTTTTTTMMMNNNNSIPNVDLTLSPKSDNNHHQQLQNQQHSTQLQLSIGGTTSSDISENNNKNDSSNRNSSPKESINSSNENKHATATSMALRVQEQAREQLRLAMAEKAYAEEARKQAKRQIEMAEQEFNNAKRIRQQAQAELDKACALKEHAMKKINSTIMQITCHSCKQHFHLQPPPVSATAPPDENSLVLSYMSSGITTEGAGEVIENNNNDHDTTTTTITDNNNNNGKKASTATNS* | 537 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo15g1701 | 536 | MobiDBLite | consensus disorder prediction | 190 | 241 | - | - | |
Amo15g1701 | 536 | Gene3D | Classic Zinc Finger | 46 | 130 | - | - | |
Amo15g1701 | 536 | PANTHER | OS03G0310200 PROTEIN | 1 | 498 | IPR039288 | GO:0009630 | |
Amo15g1701 | 536 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Amo15g1701 | 536 | MobiDBLite | consensus disorder prediction | 198 | 241 | - | - | |
Amo15g1701 | 536 | Pfam | Zinc-finger of C2H2 type | 57 | 75 | - | - | |
Amo15g1701 | 536 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 1 | 498 | - | - | |
Amo15g1701 | 536 | MobiDBLite | consensus disorder prediction | 306 | 383 | - | - | |
Amo15g1701 | 536 | Coils | Coil | 397 | 452 | - | - | |
Amo15g1701 | 536 | MobiDBLite | consensus disorder prediction | 506 | 536 | - | - | |
Amo15g1701 | 536 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Amo15g1701 | 536 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 80 | IPR036236 | - | |
Amo15g1701 | 536 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Amo15g1701 | 536 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Amo15g1701 | 536 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Amo15g1701 | 536 | SMART | c2h2final6 | 98 | 128 | IPR013087 | - | |
Amo15g1701 | 536 | SMART | c2h2final6 | 134 | 161 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo15g1701 | Amo-Chr15 | 116641979 | 116645431 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo15g1701 | 336 | 503 | C2H2 Transcription Factor Family | AT1G25250 | 44.048 | 4.09e-26 | 108 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Amo15g1701 | zf-met | 0.031 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo15g1701 | K25871 | - | gmx:100800187 | 645.966 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo05g4379 | 05 | 114400894 | 114404350 | Amo15g1701 | 15 | 116641979 | 116645431 | hybridization |