Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo15g1682 | ATGGCTAATATTGCTAACAGCATCGTCTTTGGGGGTGTTGTTGGGGTTGCAGCACAACTTCCTCAATCTCCGTTTCCATCATTACCCGTTTCAAATTCTCTCATTTTCACCCAAAAACGCAAACTTTATCTTAATTGCTCCGAAACCAACCGCATAACAATCCCTTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCGTTCAGCAGCAAGTGTTGTTGCTATGTGTTGGCGTGTCTCCCTCAACCACATGCTTCTGATTCATCATCATCATCAACTTCTTCTAATTCCAATAGCAAACCAAGTTCTTCTTCTGCTGCTCCTCCTTCAACTAAGCTCTATGTTAGTGGGTTATCTTTTCGAACCACTGAAGAAAGCTTGCGAAATGCATTTATGAATTTTGGTCAAGTTTTAGAAGTGAATTTGGTGATGGATAAAATTGCAAATAGACCAAGAGGGTTTGCATTTCTTAGATATGCAACTGAACAGGAATCTCTGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAACTAAGGCAAAGACAAAACACTAGATACTAG | 612 | 0.4036 | MANIANSIVFGGVVGVAAQLPQSPFPSLPVSNSLIFTQKRKLYLNCSETNRITIPFPSSSSSSSSSSSPFSSKCCCYVLACLPQPHASDSSSSSTSSNSNSKPSSSSAAPPSTKLYVSGLSFRTTEESLRNAFMNFGQVLEVNLVMDKIANRPRGFAFLRYATEQESLKAIEGMHGKFLDGRVIFVEVAKPRSELRQRQNTRY* | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo15g1682 | 203 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 201 | IPR035979 | GO:0003676 | |
Amo15g1682 | 203 | MobiDBLite | consensus disorder prediction | 89 | 112 | - | - | |
Amo15g1682 | 203 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 184 | IPR000504 | GO:0003723 | |
Amo15g1682 | 203 | Gene3D | - | 83 | 203 | IPR012677 | - | |
Amo15g1682 | 203 | PANTHER | RNA-BINDING PROTEIN 1 | 12 | 200 | - | - | |
Amo15g1682 | 203 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 191 | IPR000504 | GO:0003723 | |
Amo15g1682 | 203 | PANTHER | TRANSFORMER-2-RELATED | 12 | 200 | - | - | |
Amo15g1682 | 203 | SMART | rrm1_1 | 114 | 187 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo15g1682 | Amo-Chr15 | 115938664 | 115941849 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo15g1682 | 113 | 203 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.571 | 1.54e-09 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo15g1682 | - | K13195 | ahf:112802436 | 352.829 |