Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1682 ATGGCTAATATTGCTAACAGCATCGTCTTTGGGGGTGTTGTTGGGGTTGCAGCACAACTTCCTCAATCTCCGTTTCCATCATTACCCGTTTCAAATTCTCTCATTTTCACCCAAAAACGCAAACTTTATCTTAATTGCTCCGAAACCAACCGCATAACAATCCCTTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCGTTCAGCAGCAAGTGTTGTTGCTATGTGTTGGCGTGTCTCCCTCAACCACATGCTTCTGATTCATCATCATCATCAACTTCTTCTAATTCCAATAGCAAACCAAGTTCTTCTTCTGCTGCTCCTCCTTCAACTAAGCTCTATGTTAGTGGGTTATCTTTTCGAACCACTGAAGAAAGCTTGCGAAATGCATTTATGAATTTTGGTCAAGTTTTAGAAGTGAATTTGGTGATGGATAAAATTGCAAATAGACCAAGAGGGTTTGCATTTCTTAGATATGCAACTGAACAGGAATCTCTGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAACTAAGGCAAAGACAAAACACTAGATACTAG 612 0.4036 MANIANSIVFGGVVGVAAQLPQSPFPSLPVSNSLIFTQKRKLYLNCSETNRITIPFPSSSSSSSSSSSPFSSKCCCYVLACLPQPHASDSSSSSTSSNSNSKPSSSSAAPPSTKLYVSGLSFRTTEESLRNAFMNFGQVLEVNLVMDKIANRPRGFAFLRYATEQESLKAIEGMHGKFLDGRVIFVEVAKPRSELRQRQNTRY* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1682 203 SUPERFAMILY RNA-binding domain, RBD 102 201 IPR035979 GO:0003676
Amo15g1682 203 MobiDBLite consensus disorder prediction 89 112 - -
Amo15g1682 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 184 IPR000504 GO:0003723
Amo15g1682 203 Gene3D - 83 203 IPR012677 -
Amo15g1682 203 PANTHER RNA-BINDING PROTEIN 1 12 200 - -
Amo15g1682 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Amo15g1682 203 PANTHER TRANSFORMER-2-RELATED 12 200 - -
Amo15g1682 203 SMART rrm1_1 114 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1682 Amo-Chr15 115938664 115941849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1682 113 203 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.54e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1682 - K13195 ahf:112802436 352.829