Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1678 ATGGTTCGGAAGAAGAGAACTGAAGCAGCTAGTTCTAGTGGGGGTGAAAGCTCTGAGGGCCAACAGCGCCCTGCAGAAAGGAGTGCTCCACCCCAACAGGTTGCTCCCACCAGTGGGCCTGGACCACAAGGGGGAGGTAGGAGTTGGGGTCCCCAAGGAGGACGTGGTGGTTATGGAGGAGGACGTGGCCGTGGAATGCCTCAACAGCAGTATGGTGGCCCCCCTGAGTATCAAGGTAGGGGACGGGGAGGACCTCCCCAGCAAGGGTATGCTCCACGAGGTGGATATGGCGGTGGCCGCGGTGGTGGTGGTGTAGGAGGTGGTCGAGGCGTAGGACCTTCTTATGGTGGCCCACCACGGCCCCAAGTTCCCGAGCTGCACCAAGCTACCCCCCCAGTTCAGTATCAAGCGGCGGTATCTCCTCGGCCTCCTCCCTCTGAGGCTAGTTCCAGTTCATCCCAGCCACAGGAGATGCCCCAACTGGAACAGCAAATGGGGCATATGGTAACTCAGACAGAAGCTGCCCCTTCTGGTCCACCAGCTAGCAAGTCATCCATGAGGTTTCCCCTTCGCCCTGGGAAGGGTAGCTACGGCACAAAATGTATTGTCAAGGCCAACCATTTCTTTGCTGAGCTGCCAAACAAAGATCTGCATCAGTATGATGTAACAATCACTCCAGAAGTTACATCAAGAGGCGTTAACCGTGCTGTTATGGAGGAGTTGGTGAGGCTTTACCGAGAATCCCATTTGGGGAAGAGACTTCCTGCTTATGATGGGCGAAAGAGCCTCTATACAGCTGGTCCACTGCCTTTCGTGTCAAAGGAGTTTAGGATCATGTTAATTGATGAAGATGATGGAACTGGAGCTCAAAGGAGGGAGAGGGAATTCAAAGTTGTGATAAAATTGGCTGCTCGGGCAGACCTTCACCATTTAGGGCTCTTTTTGCAAGGGAGACAAACTGATGCACCTCAGGAAGCATTGCAGGTCCTCGATATTGTGTTGCGTGAACTCCCTACTACCAGGTATTGTCCTGTAGGAAGATCATTTTATTCACCCGATCTTGGAAGAAGACAGCCTTTGGGTGAGGGGTTAGAAAGCTGGCGTGGTTTCTATCAGAGTATTCGTCCCACACAGATGGGACTTTCTCTGAACATTGATATGTCTTCCACTGCATTTATTGAGCCATTGCCGGTGATTGAGTTTGTAACTCAGCTACTGAATAGGGATGTATCCAGCCGACCACTGTCAGATGCTGATCGTGTGAAGATCAAAAAAGCTCTCCGTGGTATCAAGGTTGAAGTAACTCATCGTGGAAACATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCCCAGGCTACTAGAGAGTTGACATTCCCTGTAGACGAGAGGGGAACAATGAAGTCTGTCGTTGAGTACTTCTCTGAGACCTACGGGTTTCACATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGAAATACACAGAGGCCAAATTATCTGCCAATGGAGGTTTGCAAGATTGTAGAAGGGCAGAGGTACTCAAAGAGGTTGAATGAAAGGCAGATTACTGCTTTGCTCAAAGTCACATGCCAACGACCTGTTGAAAGGGAGCGTGATATAATGCAGACAGTACATCACAATGCCTATGATCAAGACCCTTATGCTAAAGAGTTTGGAATCAAGATCAGTGAAAAGCTTGCTCAAGTTGAAGCTCGCATCCTTCCTCCACCCTGGCTCAAATATCATGATACAGGTAGAGAAAAGGACTGCCTACCTCAGGTTGGCCAGTGGAATATGATGAATAAGAAAATGGTTAATGGAGGAACAGTCAACCATTGGTTCTGCATTAACTTTTCCAGAAATGTTCAAGATAGTGTTGCCCGCACCTTTTGTTATGAGCTCGCTCAGATGTGTCAAGTATCTGGCATGGCATTCAATCTGGATCCAGTAGTTCCCCCAGTTAGTGCTCGTCCTGACCAAGTTGAGAAGGTTCTGAAAACTCGGTATTATGATGCCAAGAACAAGCTGCCTGGAAAGGATCTTGATTTGCTTATTGTTATCCTGCCTGACAATAATGGTTCTCTTTATGGTGACCTGAAACGAATATGTGAGACTGATCTTGGGCTTGTTTCCCAATGTTGTTTAACAAAGCATGTATACAAAATGAGCAAGCAGTATCTTGCAAATGTTGCTTTGAAAATTAATGTTAAGGTTGGTGGAAGGAACACTGTGCTTGTTGACGCCCTTTCACGGCGTATTCCCCTTGTCAGCGACAGGCCTACAATAATTTTTGGAGCTGATGTTACTCACCCACACCCTGGAGAGGATTCAAGCCCATCTATTGCAGCTGTTGTGGCTTCCCAAGATTGGCCTGAGATTACAAAGTATGCTGGTTTGGTTTGTGCACAAGCACATCGACAGGAACTCATTCAGGATCTCTTCAAGCAATGGCAAGATCCTAATAGAGGACAGGTCACGGGTGGAATGATTAAGGAACTACTTATATCTTTCCGGAGAGCAACTGGGCAGAAGCCACAGCGCATCATATTTTACAGGGATGGTGTGAGTGAGGGTCAATTTTATCAAGTCCTATTGTTTGAGCTTGATGCTATTAGAAAGGCCTGTGCATCTCTCGAGCCCAATTATCAGCCTCCTGTGACCTTTGTGGTAGTTCAAAAGCGCCATCACACTAGGCTTTTTGCCAGCAACCATCATGATCGAAACTCTATTGATCGGAGTGGGAATATACTGCCCGGTACTGTTGTGGACTCCAAAATCTGCCACCCAACTGAATTTGACTTTTATCTCTGTAGTCATGCTGGAATTCAGGGCACTAGTCGTCCAGCTCATTATCACGTTCTGTGGGATGAAAACAATTTCACAGCTGATGCTCTTCAGATGCTTACAAACAACCTGTGCTACACCTATGCCAGATGCACCCGTTCTGTTTCAATTGTGCCTCCTGCATATTATGCGCACTTGGCTGCATTCCGAGCCCGTTTTTACATGGAGCCCGAGACATCCGACAGTGGCTCCATGACAAGTGGTGCTGCTGCAGGTCGCGGTATGGGTGCAGGACGCAGTACGCGTGCACCTGGTGCCAGCGCTGCTGTGAGGCCCCTGCCATCCCTCAAGGACAATGTCAAGAGGGTCATGTTCTATTGCTGA 3171 0.4844 MVRKKRTEAASSSGGESSEGQQRPAERSAPPQQVAPTSGPGPQGGGRSWGPQGGRGGYGGGRGRGMPQQQYGGPPEYQGRGRGGPPQQGYAPRGGYGGGRGGGGVGGGRGVGPSYGGPPRPQVPELHQATPPVQYQAAVSPRPPPSEASSSSSQPQEMPQLEQQMGHMVTQTEAAPSGPPASKSSMRFPLRPGKGSYGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEELVRLYRESHLGKRLPAYDGRKSLYTAGPLPFVSKEFRIMLIDEDDGTGAQRREREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSSRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFHIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYDQDPYAKEFGIKISEKLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRNVQDSVARTFCYELAQMCQVSGMAFNLDPVVPPVSARPDQVEKVLKTRYYDAKNKLPGKDLDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPNRGQVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRNSIDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAGRGMGAGRSTRAPGASAAVRPLPSLKDNVKRVMFYC* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1678 1056 MobiDBLite consensus disorder prediction 11 34 - -
Amo15g1678 1056 Pfam Argonaute linker 2 domain 536 582 IPR032472 -
Amo15g1678 1056 SMART DUF1785_2 343 395 IPR014811 -
Amo15g1678 1056 MobiDBLite consensus disorder prediction 1013 1038 - -
Amo15g1678 1056 Gene3D - 753 1056 IPR036397 GO:0003676
Amo15g1678 1056 SUPERFAMILY Ribonuclease H-like 670 1005 IPR012337 -
Amo15g1678 1056 SMART PAZ_2_a_3 400 532 IPR003100 GO:0005515
Amo15g1678 1056 CDD PAZ_argonaute_like 395 509 - -
Amo15g1678 1056 ProSiteProfiles Piwi domain profile. 684 1005 IPR003165 GO:0003676
Amo15g1678 1056 SUPERFAMILY PAZ domain 202 547 IPR036085 GO:0005515
Amo15g1678 1056 Gene3D paz domain 389 514 - -
Amo15g1678 1056 Pfam PAZ domain 400 525 IPR003100 GO:0005515
Amo15g1678 1056 Pfam Mid domain of argonaute 593 668 IPR032473 -
Amo15g1678 1056 ProSiteProfiles PAZ domain profile. 396 510 IPR003100 GO:0005515
Amo15g1678 1056 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 90 1055 - -
Amo15g1678 1056 CDD Piwi_ago-like 554 1004 IPR045246 -
Amo15g1678 1056 Pfam N-terminal domain of argonaute 200 334 IPR032474 -
Amo15g1678 1056 MobiDBLite consensus disorder prediction 143 179 - -
Amo15g1678 1056 PANTHER PROTEIN ARGONAUTE 1A 90 1055 - -
Amo15g1678 1056 Pfam Piwi domain 685 1004 IPR003165 GO:0003676
Amo15g1678 1056 MobiDBLite consensus disorder prediction 1 191 - -
Amo15g1678 1056 Pfam Argonaute linker 1 domain 344 394 IPR014811 -
Amo15g1678 1056 Gene3D - 574 747 - -
Amo15g1678 1056 Pfam Glycine-rich region of argonaut 72 177 IPR024357 -
Amo15g1678 1056 SMART Piwi_a_2 684 1005 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1678 Amo-Chr15 115617478 115625010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1678 76 1056 Eukaryotic Initiation Factors Gene Family AT1G48410 81.130 0.0 1615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1678 K11593 - gmx:100780375 1733
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4442 05 115653911 115661368 Amo15g1678 15 115617478 115625010 hybridization