Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1674 ATGGATGATTCAACCTCAGATTGTCAGCTGAATCCAAGCGAAGTGGACTATGAATTTGAATCTAACGAAGTTCCTGAGCCTCTCTCGGTTGTTGATGACCAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCAGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGTAGAGAGAGAGAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATTCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTTGTTGTACAATAGAGAATAACGAGGAAGCCAGGATGAGAAGCACACAAAGGAGTGAGAGCATGCATTCATTTTTTAACAAGTTTATCACCCGAAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCCGAGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCGAGGTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTCACAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTTGAACGAGTAAGCCAAGTGTCACCGAGATATATACTAGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTTTTGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGAGCTGACTGCAATTCTGCACCGTGCCTACGATAACGTCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGTCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTACAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAGCGAGATAAACTTGTTTGATGCCGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTTGCTGTATAG 1437 0.4349 MDDSTSDCQLNPSEVDYEFESNEVPEPLSVVDDQLVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVQSTNRKGNEIKNQLITCSREREWKSKISPTEKTNSTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSICCTIENNEEARMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVSRSIFNKFVVTYDSVTAEVKCQCLLFESRGILCRHALSVLSFERVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDQLELTAILHRAYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPSRIRTRGRPKNRLGSKLDKQITNATKKKKTKVLSEINLFDAASVVHSNSSQYQGHVMNYQFRVPAAGDNSFAV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1674 478 MobiDBLite consensus disorder prediction 383 422 - -
Amo15g1674 478 MobiDBLite consensus disorder prediction 391 409 - -
Amo15g1674 478 PANTHER OS03G0843700 PROTEIN 166 394 - -
Amo15g1674 478 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo15g1674 478 SMART 26again6 291 318 IPR006564 GO:0008270
Amo15g1674 478 ProSiteProfiles Zinc finger SWIM-type profile. 280 316 IPR007527 GO:0008270
Amo15g1674 478 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 148 IPR031052 GO:0006355
Amo15g1674 478 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 166 394 IPR031052 GO:0006355
Amo15g1674 478 Pfam SWIM zinc finger 287 313 IPR007527 GO:0008270
Amo15g1674 478 PANTHER OS03G0843700 PROTEIN 26 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1674 Amo-Chr15 115530302 115533377 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo15g1674 FAR1 2.4e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1674 - - adu:110280503 541.962