Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1654 ATGATGATGTTCTCCAATCATGTCACATTTTCACACAACACACAAACACCTCAAAACTTCGCTCCCAAAACCAAACACCTTATCTCCCATCCACTTCTACTCTCTCTTTCACGAGATTTTTCCTTTGATTTCTCTCCAATCACTTCAATGGCAGCCACCATTCCTTGCCACTACTATGCTTCTGCAGCCACCACATCCAAATTCTTCATCTCCAATAATGCACACTCCAAACGTCTCACCTACCCTCTTTCTCTTACCAATGCTCGAGGATTCCGAGGTTTCAGTGCTGCTCGTTGCTCTTACCAACCACCACCCCATTATTCTGAACTTCAGAGTAAAGATAAAGGGAATTCGTTTTCCTTAAAGCAGTGTGCGATTTCTATAGCACTTGCAGTTGGGTTGATGACCGGAGTTCCTGCACTGGGGTTGCCTGCCAATGCTCATACAGCTAGCCCTGTGTTGCCTGATCTGGCTGTGTTGATATCTGGACCACCAATCAAGGATCCCGGGGCATTATTGAGATATGCTCTTCCCATTGACAATAAGGCAATCAGAGAGGTACAAAAACCACTTGAAGATATTACAGATAGTCTTAAGGTTGCTGGAGTCAAAGCACTTGATTCTGTTGAAAGAAATGTGAGGCAGGCATCTCGAGCTCTCAAGCAAGGGAAGACCCTAATTGTAACAGGGCTAGCAGAATCAAAGAAAGAACACGGAATCGAATTGCTTAATAAGCTGGAAGCTGGTATGGATGAGCTTGAACTGATAATACAGGATAGGAATCGAGATGCTGTTGCACCGAAACAGAAGGAGCTACTTAATTACGTCGGCGGTGTTGAAGAAGACATGGTCAATGGATTCCCATATGAAGTTCCCGAGGAATACCGAAATATGCCGTTGTTGAAGGGGAGAGCAGCAGTGGATATGAAGGTCAAGATCAAGGACAATCCAAATCTTGAGGAATGTGTTTTCCATATAGTTCTTGACGGTTATAATGCCCCCGTAACTGCTGGAAATTTTGTCGATTTGGTAGAAAGGCACTTCTACGACGGCATGGAAATCCAGAGAGCCGATGGATTCGTTGTCCAAACTGGTGATCCTGAAGGCCCTGCTGAGGGTTTTATTGATCCAAGCACAGAGAAAACCAGGACAATACCTTTAGAAATTATGGTGAATGGGGAAAAGGAACCATTTTATGGAGCAACTCTAGAGGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCATTTAATGCATTCGGAACAATGGCAATGGCAAGAGATGAATTCGAGAACAACTCGGGCTCTAGCCAGATATTTTGGCTACTGAAAGAAAGCGAGTTAACTCCTAGCAATGCCAATATATTAGACGGCCGATATGCTGTCTTCGGCTATGTAACAGAAAACGAGGATTTCTTGGCGGACCTCAAGGTTGGTGATGTCATAGAATCAATGCAAGTAGTGTCTGGCCTTGATAATTTGGTTAATCCAAGCTACAAGATTGCTGGCTAA 1512 0.4405 MMMFSNHVTFSHNTQTPQNFAPKTKHLISHPLLLSLSRDFSFDFSPITSMAATIPCHYYASAATTSKFFISNNAHSKRLTYPLSLTNARGFRGFSAARCSYQPPPHYSELQSKDKGNSFSLKQCAISIALAVGLMTGVPALGLPANAHTASPVLPDLAVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKVAGVKALDSVERNVRQASRALKQGKTLIVTGLAESKKEHGIELLNKLEAGMDELELIIQDRNRDAVAPKQKELLNYVGGVEEDMVNGFPYEVPEEYRNMPLLKGRAAVDMKVKIKDNPNLEECVFHIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMVNGEKEPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFENNSGSSQIFWLLKESELTPSNANILDGRYAVFGYVTENEDFLADLKVGDVIESMQVVSGLDNLVNPSYKIAG* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1654 503 CDD cyclophilin_TLP40_like 316 490 - -
Amo15g1654 503 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC 97 501 IPR044665 GO:0003755
Amo15g1654 503 SUPERFAMILY Oxygen-evolving enhancer protein 3, 171 283 IPR023222 -
Amo15g1654 503 SUPERFAMILY Cyclophilin-like 325 484 IPR029000 -
Amo15g1654 503 Coils Coil 243 263 - -
Amo15g1654 503 Gene3D - 179 285 IPR023222 -
Amo15g1654 503 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC 97 501 - -
Amo15g1654 503 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 324 483 IPR002130 GO:0000413|GO:0003755
Amo15g1654 503 Gene3D - 318 495 IPR029000 -
Amo15g1654 503 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 326 503 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1654 Amo-Chr15 115223227 115228090 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1654 - - lja:Lj2g3v1014320.2 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g3480 05 97920726 97927530 Amo15g1654 15 115223227 115228090 hybridization