LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1627	ATGATAAGAGAGGTGTCAGGAAAACTTTCAGAGTTGAAGACTACCATCGATTTGAGGAGGGAAAAAGCCATTTATCACACCCTAAATATGCTTAGCTTTAATGTGACGAGAAAATGTCTCCTTGCAGAAGGTTGGTGTCCTGTTTTTGCGACAAGTCAGTTGCTAATACCTGACAGAGTTGCCAAGTGCCAGGAGGCAAATCCCGGTGTATACACAATCATCACCTTTCCGTTCCTTTTCGCTATCATGTTTGGTGACTGGGGCCATGGCATATGCATATTGCTGGCTTCTTTGTACTTCATAATCAGAGAGAAAAAGTATTCGAGTCAGAAACTTGGAGACATCATGCAAATGGCATTTGGCGAACGCTATATTATTGTGATGATGGCAATCTTCTCAATCTACACTGGCTTCATATACAATGAATTCTTCTCTATCCCGTTTGCTATATTTGCACCATCTGCCTATGCATGCCGTGATCCATCATGCAGTTAA	495	0.4182	MIREVSGKLSELKTTIDLRREKAIYHTLNMLSFNVTRKCLLAEGWCPVFATSQLLIPDRVAKCQEANPGVYTIITFPFLFAIMFGDWGHGICILLASLYFIIREKKYSSQKLGDIMQMAFGERYIIVMMAIFSIYTGFIYNEFFSIPFAIFAPSAYACRDPSCS*	165

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1627	164	Pfam	V-type ATPase 116kDa subunit family	14	53	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Amo15g1627	164	Pfam	V-type ATPase 116kDa subunit family	60	158	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Amo15g1627	164	PANTHER	V-TYPE PROTON ATPASE SUBUNIT A	59	162	-	-
	Amo15g1627	164	PANTHER	VACUOLAR PROTON ATPASES	59	162	IPR002490	GO:0033179\|GO:0046961\|GO:1902600
	Amo15g1627	164	PANTHER	V-TYPE PROTON ATPASE SUBUNIT A	19	54	-	-
	Amo15g1627	164	PANTHER	VACUOLAR PROTON ATPASES	19	54	IPR002490	GO:0033179\|GO:0046961\|GO:1902600

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1627	Amo-Chr15	114381939	114385167	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1627	1	164	Primary Pumps ATPases(2)	AT4G39080	54.545	8.43e-77	242

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g1627	K02154		-	qsu:111995652	247.669

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