Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1619 ATGCACCAAAATTGGATTTTTGAGCACACCCATTTGAAGATGGCAAGGATTCACCACCATATTCAACAAAAAGATGGTTACTTGAGCTACTACTACCCTCCACCACCACCACTACCACCACTATTACCGCCACCATATTTGTCCACACCTTCAACATCTTCTTCAGCTTCATCTTCATCTTCATCTTCATCTTCATCACCATCTTCTGGTACTAGGATTAGTCCTGCTGTTCTTTTCATCATAGTAATTCTTGCAGTTTTATTCTTCATCTCTGGTGTCCTCCATCTGCTTGTTAGATTTCTCATGAAGCACCCTTCTTCATCTGCATCTGCTCAATCTAATAGAAACCACGAGATTTCAACCTCTGATGCACTACAAAGACAATTACAGCAGCTTTTCCATCTGCATGATTCTGGTTTGGATCAGGCCTTCATCGACGCGCTTCCGGTTTTTCAGTATAAGGAGATTGTGGGGCTGAAGGAGCCATTTGATTGTGCTGTTTGTCTGTGTGAGTTTTCTGAGAAGGATAACCTCAGGTTGTTGCCTATGTGCAGCCACGCGTTTCACATAAGTTGTATAGACACATGGCTTCTTTCGAATTCCACTTGCCCTCTTTGTAGAGGGACACTCCTTACTCCGGGGTTTTCGATGGAGAATCCAATGTTTGATTTTGATGATATGAGGGAAGATGAAGGGTGGCCTTGTGATGGTGAAAATGGATGTACAAATAGGCAGAAGAAAGTTGTGGTTGAAGAAATCAATGATGAGAAAAGGGGAATTTTCCCCGTAAGGCTCGGTAAATTCCGGAAGATGGATGTGGAGACTGGTGAGGAGGGTGGAGTAGTAGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTTTTCAATGGGATCTTATCAGTATGTTGTGGCCAATTCAGAACTCAGGATAGCCTTGAATCATGACCGGAGTGATTGCAAATTGAGGCTTGCTGCCGAAGGAAAACAACATTCTGAGAAGGCTGCATTGGAAGGGGATATGGATGCAAAGAACATTAGGAGTGTGAGTAAAGGTGAGAGCTTTTCAGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGAAAGTTTTCAAGTTCTTCCGAGGCTCATATTGGCATGCCTTCTTATCTTAATTCAGACATGCCTAGGATGAGGGAAGCAGAAGAAGCATGA 1194 0.433 MHQNWIFEHTHLKMARIHHHIQQKDGYLSYYYPPPPPLPPLLPPPYLSTPSTSSSASSSSSSSSSSPSSGTRISPAVLFIIVILAVLFFISGVLHLLVRFLMKHPSSSASAQSNRNHEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDNLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSMENPMFDFDDMREDEGWPCDGENGCTNRQKKVVVEEINDEKRGIFPVRLGKFRKMDVETGEEGGVVGETSSSNLDARRCFSMGSYQYVVANSELRIALNHDRSDCKLRLAAEGKQHSEKAALEGDMDAKNIRSVSKGESFSVSKIWLWPKKGKFSSSSEAHIGMPSYLNSDMPRMREAEEA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1619 397 SMART ring_2 165 206 IPR001841 -
Amo15g1619 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 212 IPR013083 -
Amo15g1619 397 CDD RING-H2_PA-TM-RING 164 207 - -
Amo15g1619 397 SUPERFAMILY RING/U-box 144 213 - -
Amo15g1619 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 377 - -
Amo15g1619 397 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Amo15g1619 397 MobiDBLite consensus disorder prediction 48 71 - -
Amo15g1619 397 MobiDBLite consensus disorder prediction 42 71 - -
Amo15g1619 397 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 51 377 - -
Amo15g1619 397 Pfam Ring finger domain 164 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1619 Amo-Chr15 114081557 114083861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1619 62 374 C3H Transcription Factor Family AT2G18650 41.243 3.62e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1619 - - adu:107490806 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4545 05 118019295 118020822 Amo15g1619 15 114081557 114083861 hybridization