Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1601 ATGCATGGGTCCGGTTCTGAGGAGTGGAAACACAGCCGGCACATGTGGCCCAACGCCACTGCTGTAGCCCCCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTTATGTTGGTGATTGTGCACTTTTCAAGCCACCCCGGCATTCCCCACCTTTTATTGGAATAATTCGCAAGTTAATATTTAATAAAGAAGAAAGTCCAACTTTAGAAGTTAATTGGCTTTACCGACATGCTGATGTGAAGCTTACCAAGGGCGTATTGGAAGCTGCCCCAAACGAAGTCTTCTACTCATATCACAAGAATGAAATATCTGCTTCATCATTACTCCATCCGTGTAAAGTCGCGTTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCTGCGTTTGTCTGCAGGCGAGTGTATGACACTGAGAACAACTGTATATGGTGGCTAACCGATAAGGAATACATTAATGCTGTTCCGGAAGAAGTTGACCGGTTATTAGACAAGACAAAACTAGAAATGCATGGGGCAGCGCAGTCGGGAGGCCGTTCTCCAAAACCTTTGAATGGTCCGACATCAACACAATCTTTGAAATCTGGTTCTGATAGTGTTCAAAATAGTTCTTCCTTTGGTACACAGGTTAAAGGAAAAAAGAGAGAAAGGGGTGATCAGGGTTCTGATTTATCTAAACGAGAGCGGCTATTTAAAGCAGAAGATGGGGATTTTGGCCCAGTTAGATCTGAGAGCATGTTGAGGAGTGAGATCAGTAAAATTACTGACAAAGGTGGGCTTGTAGACTTTGAAGGAGTTGAAAGACTTGTACAACTCATGCAACCTGATGGTGCTGATAAAAAAATAGATTTGGGTGGGAGAATAATCCTTGTTAATGCAATAGCAGCAACCGAGCGTGATGATTGTCTTAGCTGGTTTGTACAGCTCAGGGGTTTACCTGTGTTGGATGAATGGCTCCAGGAGGTTCACAAGGGAAAAAATGGTGATAGTAATACCCCTAAAGAAAGCGACAAATCAGTTGAGGAATTTTTGTTAGCCTTGCTTCGTGCATTGGATAGGCTTCCTGTGAACCTTCATGCATTGCAAACATGCAATGTTGGGAAGTCTGTTAATCATTTACGCACTCACAAAAATTCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTAGATACATGGAAGAAACGTGTTGAGGCTGAAATGAATATGACCGATTCGAAATCTGGTTCTACACGTCCTGTGTCTTGGCAAGCAAAACCGGCAGCTTCTGAGATCTCTCATGTTGGAAATAAGAAAACTGGAGGATCTGAGAATGCTACAAAGGGATCTGCAATTCAATCATCAGTATCCAAAAATTCATTGGCTAAGCATGGTTCTGGGGAAGCATTGTCCAAGTCTTCTTCAGCTCCTAGCTCAATTAAATTGATGACTACCTCAATGGGCTGTACCCCTAAAGATCAGAATGTGAAGGCATTAGTTGGTGCCCCAGCATCAGATCAACCTCTGACACCTATCAAGGAGGAAAGGAGCAGCAGTTCTAGTCAGTCCCAAAACAACAGCTTATCTTGTTCTAGTGAACATGCAAAAACAATTGGGTCTTGTAGGGAAGATTCTAGGAGTTCCACTGCTGTGTCAATGAGTGCGAGCAAAATACCTGGTGGTACATCTCGAACTCGGAAGTCAAGCAATGGAGTACATGGGGCTGGTGTTGCACTTGCTCAGAAGGAGCCCACTCGGTAA 1749 0.4345 MHGSGSEEWKHSRHMWPNATAVAPDSSPSQFICKDGRKIYVGDCALFKPPRHSPPFIGIIRKLIFNKEESPTLEVNWLYRHADVKLTKGVLEAAPNEVFYSYHKNEISASSLLHPCKVAFLRKGVELPSGISAFVCRRVYDTENNCIWWLTDKEYINAVPEEVDRLLDKTKLEMHGAAQSGGRSPKPLNGPTSTQSLKSGSDSVQNSSSFGTQVKGKKRERGDQGSDLSKRERLFKAEDGDFGPVRSESMLRSEISKITDKGGLVDFEGVERLVQLMQPDGADKKIDLGGRIILVNAIAATERDDCLSWFVQLRGLPVLDEWLQEVHKGKNGDSNTPKESDKSVEEFLLALLRALDRLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARSLVDTWKKRVEAEMNMTDSKSGSTRPVSWQAKPAASEISHVGNKKTGGSENATKGSAIQSSVSKNSLAKHGSGEALSKSSSAPSSIKLMTTSMGCTPKDQNVKALVGAPASDQPLTPIKEERSSSSSQSQNNSLSCSSEHAKTIGSCREDSRSSTAVSMSASKIPGGTSRTRKSSNGVHGAGVALAQKEPTR* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1601 582 CDD TFIIS_I 359 401 - -
Amo15g1601 582 MobiDBLite consensus disorder prediction 404 473 - -
Amo15g1601 582 MobiDBLite consensus disorder prediction 174 233 - -
Amo15g1601 582 MobiDBLite consensus disorder prediction 214 233 - -
Amo15g1601 582 MobiDBLite consensus disorder prediction 185 213 - -
Amo15g1601 582 MobiDBLite consensus disorder prediction 507 566 - -
Amo15g1601 582 Pfam TFIIS helical bundle-like domain 351 400 IPR017923 -
Amo15g1601 582 ProSiteProfiles TFIIS N-terminal domain profile. 324 403 IPR017923 -
Amo15g1601 582 SMART TFS2_5 323 402 IPR003617 GO:0005634
Amo15g1601 582 MobiDBLite consensus disorder prediction 406 420 - -
Amo15g1601 582 ProSiteProfiles BAH domain profile. 37 151 IPR001025 GO:0003682
Amo15g1601 582 Gene3D - 21 236 IPR043151 -
Amo15g1601 582 SMART BAH_4 37 151 IPR001025 GO:0003682
Amo15g1601 582 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 270 404 IPR035441 -
Amo15g1601 582 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 306 413 IPR035441 -
Amo15g1601 582 MobiDBLite consensus disorder prediction 498 582 - -
Amo15g1601 582 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 579 - -
Amo15g1601 582 Pfam BAH domain 38 144 IPR001025 GO:0003682
Amo15g1601 582 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 579 - -
Amo15g1601 582 MobiDBLite consensus disorder prediction 432 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1601 Amo-Chr15 113611634 113614455 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo15g1601 BAH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1601 - - ahf:112750750 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4562 05 118188006 118188533 Amo15g1601 15 113611634 113614455 hybridization