Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1600 ATGCATGGGTCCGGTCCTGAGGAGTGGAAACACAGCCGGCACATGTGGCCTGTACCTTCCAACGCCACCGCTGTAGCCCCCGATTCTTCACCGTCTGAATATATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTCAAGCCACCCCAGGATTCCCCACCTTTTATTGGAATAATTCGCAAGTTAATAGTTAATAAAGAAGAAAGTCCAACTTTAGAAGTGAATTGGCTTTACCGACATGCTGATGTGAATCTTGCCAAGGGTATATTGGAAGCTGCCCCAAACGAAGTCTTCTACTCCTATCACAAGGATGAAATATCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCGTTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCTGCTTTTGTCTGCAGGCGAGTGTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAAGATTACATTAATGCTGTTCAGGAAGAAGTTGACCAGTTATTAGATAAGACAAAATTAGAAATGCATGGGGCAGTGCAGTCAGGAGGCCGTTCGCCAAAAGCTTTGAATGGTCCGACGACAACACAATCATTGAAATCTGGTTCTGATAGTGTTCAAAATAATTCTTCCCTTGGTGCACAGGTTAAGGGAAAAAAGAGAGAAAGGGGTGAGCAGGGATCTGATCCATACAAAAGAGAGCGGTTATTTAAAGCAGATGATGGGGATTCTGGACAGGGTAGACCTGAGAGCATGATGAAGTCTGAGATTGCTAAAATTACTGACAAAGGTGGGCTTGTAGACTTTGAAGGAGTTGAAAGACTTGTACAGCTCATGCAACCAGACAATGGTGATAAAAGAATAGATTTGGCTGGGCGAATTATGCTTGTTGATGTTATAGCAGCTACAGACCGTTATGACTGTCTTGGTTGGTTTGTACAGCTTAGGGGTTTGCCTGTGTTGGACGAATGGCTCCAGGAGGTCCACAAAGGGAAAATTAGTGACAGTAGTAACCATAAAGAAAGTGACAAATCTGTGGAGGAATTTTTGTTAGCGTTGCTTCGTGCATTGGATAAGCTTCCTGTTAACCTTCATGCATTACAAACATGCAATGTTGGGAAATCTGTCAATCATTTACGCACACACAAAAATTCTGAAATTCAGAGGAAGGCTAGGGGTTTAGTAGACACGTGGAAGAAACGTGTTGAGGTTGAAATGAATATGACTGATTCAAAATCTGGTTCTACTCGTCCTGTTTCATGGCAAGTAAAGCCAGCGGCTTCTGAGGTCTCTCATGTTGGAAATAAGAAAACTGGAGGACCGGAGAATGCTACAAAGGGATCTGCAATTCAACCTTCGGTATCTAAACCTTTGTTGGCTAAGCATGTTTCTGTGGAGGCCCTGTCCAAGTCCTCTTCAGCTCCTGGTTCAATTAAATCGATGACTACCTCAGTAAGCAGTACCTCTAAAGATCAAAATGTTAAGGCGGTAGTTGGCGCTGCAGCATCAGATCAACCGTTGACACCTATCAAGGAGGAAAGGAGCAGCAGTTCTAGTCAATCTCAGAACAACAGCTTTTCTTGTTCTAGTGAACATGCAAAAACTGGTGGGTCTTGCCGGGAAGATTCAAGGAGCTCCACTGCAGTGTCAATGAGTGTGAGCAAAATGCCCGGTGGTGCATCTCGAACCCGGAAGTCCAGCAATGGTATACATGGCGCTGGTGTCGCTCTTGCTCAGAAGGATCCCACTTCTGCAAAAAGTTCCACTAGAAATTCCCCTTCTGAAAAAGTTTCACCAACTCGGGTAGCCCATGAAAAGTCTCCTGATCAGCCAACCGATCAAGGGAGTAATAATCAGCGTCTGATCCTTAGGCTGCCAAATACTGTTCGCAGTCCTTCACGAGGTGCTAATGGTGGCTCTTCTGAAGAACCTGCTATTCCTTGTGGGAAAGCTTCGCCTCCTTCTGACAAGAATGAGTCTCAGGATAGAAGAGTGAAGGCTAAGAATGATGGTTTGCATACCATTGCTTCATCAAATGTGATAACTGAGGCATGTGCTACAAGTTGTGAGGATCATAACGGTTCTCCTTTGGGTGATGAACGGGGAAGGGTTAATGAAGATGGCGATAAAGTAGCAGAGACATCAAAACAAACTAATTCCCCTTCAGGTTTTATTTCCAGATCTGGCCAGACTTATGATGCATCTTTAAGCCCTATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCTGAAGCAAGTGCCTCTGTTTCGCCTGGAGATGATGGGATGAACTTACTTGCTACTGTTGCTGCAGGGGAAATATCCAGATCTGAAAATATCTCACCTCCAGCTTCACCTGAGGGGAAGTCATCTGTGGCAGATGAATCAAGTTCAGCCAATGTTTCCAAGCTAAAACATCCGGCTGAAACATCTGCTCATACTGTTGCACAATCTGATGCAGTAGCTTCAGGAGAGCCTCAGTTTAGTGCTGTTGAGTCATTGCAATTTAAAAATGATCCAGGGCACCCTGTGACAACAATGTTGCGTGATTCTTCTGTAGACGAAGCTATTTCATCTAGTTGTAAAGAGAAATCTGGTGATAACAGAGCTCAAATAAATTGTTCAGCTGCAGATTTGTCACAAAATGCCGAAGCTGTATGCCCACGGTTGGAAACGGCTGAGGATACTCCTGAAACCTTGTTACCATATAAAAAGGAGACTCAGGACCAATCACTCGAGCAGAGGGAATTTGGAAGTCAGTGGGCTAAAAGTAGCGGTTCAGACTCTCAACCGGTGAAGGTTGATCACTTGGGTGAGACAATCCTGGAGAATGGTAAAATGTTAGTTTCGAAAGAGACTGTTGCAACTGTAAAGATTGAAAAGGAGGTAGGTGAAAAGTTACCGGAGTTATCTTCAGATGATAAGAAGATTGGTGTGGAGCAAGTGATGGTTACTGGTATGTCATCTCAAAAGTCATCTCCAGTTACAGAAAAATCTGAGTCTCCAGATTTTAAAAAGGAGGATGTGGCTCCACCCTCTGCTTCAGGTAATTCTTTGCCAGCATCCAGGGATGAACAAGCAAGTGAGATGAAGTTGGCTGCCGCTGAACTTGATGAAAAACGGAAGGATCGAGACTCAGCAGTTTCAGCTGAAGCTAATGGATGCGATGAAGATAATTCTGGCAGGAAAGAGGTTCTTCGACAATGCTCTATGTCTTCAAATCGCCCAGAGTTGTCTAAAGTTCCTGGGAAAGAAAATGAAGCATCCAAAACCTCAGAGTGTAACTCAGATGGGAATGATTCTCATGTTGCAGGAGAGCATGCCTGCAGTATTAATCCATCTGTAACTGTTTCTGGGTCTGATGCAGCCGTAAGATTGGACTTTGATTTAAATGAGGGTTTCCCTGTTGATGATGTGAGCCAAGGGGACATTGTTAGACAGGAAGAACATGTCGCATCATCTGTGGTTCGAAATCCTTCTGCATTGCCTTTCCCCATTTCGTCCATCTCTGGGGGATTCCATGCAACAATTACCGTGGCATCTGCTGCCAAGAGACCATTAATTCCGCCGGAAAACCCATTGCGCAGTAAGGGTGAACTTGGATGGAAAGGCTCTGCTGCTACAAGCGCCTTCCGGCCAGCTGAGCCTAGGAAAAACGTAGAGACATCATCAACTAGTGATATTCCTTCTGTTGATTCCACTGCTTTGAAACAATGCCGTGCTCCTTTAGATTTTGATTTGAATGTTGCTGATGAAAGAAGTTTTGAGGATGTAGCTTCCCATGGTTCTTTAGAATCTGGTCCACCTGATCGCACCACTATGGGACTTGATCTTGATTTGAACAGAGTTGATGAGACTCCTGATGCTGTTTCTTTCTCTCTCAGTAAACTGGATGTTCCTGCTTTGCCAAGTAAGTCTTCACTGTCTGGTGGGTTATCCAATGGCGGGAGTGTGTCGAGAGACTTTGATTTGAATAATGGACCAGGCCTTGATGAAGTTGGCACCGAGGTCCCAGCTCGAAGTCAGCAGATGAAAAATAGTGCACCATTTCCATCTGCTATCCATGGTACGAGAGCGAACACTGCTGAATTGGGGAATTATTCGTCATGGTTTCCTCCAGGCAATTCATATTCAGCAATTACTGTCCCTGCGCATCTTTCTGGTAGAGGTGAACAGAGTTATGTTACAGCTGCTGCGGCACAGCGGCTCATGGCTACTTCTGGTAGCAGTTCCTTTGGTCCTGAGCTGTACAGGGGGCCAGTGCTTTCATCCTCTCCTGCTGTTGCTTACCCACCTACTGCACCCTTTCCGTATCCAGGGGGATTTCCATTTGAGACCAGTTTTCCATTATCTTCAAACTCCTTTTCTGTTGGTTCAGCAGCATTTATGGATTCATCAACTGTTGGTGGACTCTGCTTTCCTACCATACCGTCACAGCCAGTTGGACCTGGCGGTGTTGTCTCCTCAGCGTATGCTCGTCCCTATGTCATGAGTCTTCCAGGTGGTACAAGTAATGTGATTCCTGACAACCGCAAATGGGGAAGTCAAAGTCTCGATCTTAATTCAGGCCCTGGTGGCACGGATACAGACCGAAGAGAGGATAGATTGCCTTCTGGGTTGAGGCAAGTGCCCGCTCCCAATCCCAATTCACAATCCTTGATGGAAGAACATATGAAGATGTTTCAGGTGGCAGGTGTGTTGAAGAGGAAAGAACCTGATGGTGGTTGGGATGGAGCTGATAGATTTAGCTACAAACAGCCCTCATGGCAGTAG 4776 0.4506 MHGSGPEEWKHSRHMWPVPSNATAVAPDSSPSEYICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLIVNKEESPTLEVNWLYRHADVNLAKGILEAAPNEVFYSYHKDEISAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYINAVQEEVDQLLDKTKLEMHGAVQSGGRSPKALNGPTTTQSLKSGSDSVQNNSSLGAQVKGKKRERGEQGSDPYKRERLFKADDGDSGQGRPESMMKSEIAKITDKGGLVDFEGVERLVQLMQPDNGDKRIDLAGRIMLVDVIAATDRYDCLGWFVQLRGLPVLDEWLQEVHKGKISDSSNHKESDKSVEEFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNSEIQRKARGLVDTWKKRVEVEMNMTDSKSGSTRPVSWQVKPAASEVSHVGNKKTGGPENATKGSAIQPSVSKPLLAKHVSVEALSKSSSAPGSIKSMTTSVSSTSKDQNVKAVVGAAASDQPLTPIKEERSSSSSQSQNNSFSCSSEHAKTGGSCREDSRSSTAVSMSVSKMPGGASRTRKSSNGIHGAGVALAQKDPTSAKSSTRNSPSEKVSPTRVAHEKSPDQPTDQGSNNQRLILRLPNTVRSPSRGANGGSSEEPAIPCGKASPPSDKNESQDRRVKAKNDGLHTIASSNVITEACATSCEDHNGSPLGDERGRVNEDGDKVAETSKQTNSPSGFISRSGQTYDASLSPMNALVESCVKFSEASASVSPGDDGMNLLATVAAGEISRSENISPPASPEGKSSVADESSSANVSKLKHPAETSAHTVAQSDAVASGEPQFSAVESLQFKNDPGHPVTTMLRDSSVDEAISSSCKEKSGDNRAQINCSAADLSQNAEAVCPRLETAEDTPETLLPYKKETQDQSLEQREFGSQWAKSSGSDSQPVKVDHLGETILENGKMLVSKETVATVKIEKEVGEKLPELSSDDKKIGVEQVMVTGMSSQKSSPVTEKSESPDFKKEDVAPPSASGNSLPASRDEQASEMKLAAAELDEKRKDRDSAVSAEANGCDEDNSGRKEVLRQCSMSSNRPELSKVPGKENEASKTSECNSDGNDSHVAGEHACSINPSVTVSGSDAAVRLDFDLNEGFPVDDVSQGDIVRQEEHVASSVVRNPSALPFPISSISGGFHATITVASAAKRPLIPPENPLRSKGELGWKGSAATSAFRPAEPRKNVETSSTSDIPSVDSTALKQCRAPLDFDLNVADERSFEDVASHGSLESGPPDRTTMGLDLDLNRVDETPDAVSFSLSKLDVPALPSKSSLSGGLSNGGSVSRDFDLNNGPGLDEVGTEVPARSQQMKNSAPFPSAIHGTRANTAELGNYSSWFPPGNSYSAITVPAHLSGRGEQSYVTAAAAQRLMATSGSSSFGPELYRGPVLSSSPAVAYPPTAPFPYPGGFPFETSFPLSSNSFSVGSAAFMDSSTVGGLCFPTIPSQPVGPGGVVSSAYARPYVMSLPGGTSNVIPDNRKWGSQSLDLNSGPGGTDTDRREDRLPSGLRQVPAPNPNSQSLMEEHMKMFQVAGVLKRKEPDGGWDGADRFSYKQPSWQ* 1592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1507 1525 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1189 1234 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 217 248 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 657 671 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 692 730 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 894 934 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1219 1234 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 914 932 - -
Amo15g1600 1591 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 271 406 IPR035441 -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1030 1065 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1304 1322 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 899 913 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 986 1107 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 715 730 - -
Amo15g1600 1591 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
Amo15g1600 1591 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1591 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1507 1554 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 409 456 - -
Amo15g1600 1591 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1591 - -
Amo15g1600 1591 Coils Coil 1024 1044 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 468 495 - -
Amo15g1600 1591 Gene3D - 22 248 IPR043151 -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1571 1591 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 468 672 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1066 1080 - -
Amo15g1600 1591 ProSiteProfiles TFIIS N-terminal domain profile. 320 406 IPR017923 -
Amo15g1600 1591 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 308 416 IPR035441 -
Amo15g1600 1591 Pfam BAH domain 41 146 IPR001025 GO:0003682
Amo15g1600 1591 MobiDBLite consensus disorder prediction 582 599 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 610 639 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 510 569 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 1304 1349 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 777 827 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 409 423 - -
Amo15g1600 1591 CDD TFIIS_I 328 404 - -
Amo15g1600 1591 ProSiteProfiles BAH domain profile. 40 154 IPR001025 GO:0003682
Amo15g1600 1591 SMART TFS2_5 326 405 IPR003617 GO:0005634
Amo15g1600 1591 SMART BAH_4 40 154 IPR001025 GO:0003682
Amo15g1600 1591 MobiDBLite consensus disorder prediction 695 714 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 179 253 - -
Amo15g1600 1591 MobiDBLite consensus disorder prediction 188 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1600 Amo-Chr15 113584503 113592567 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo15g1600 BAH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1600 - - ahf:112750750 3105.46