Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1582 ATGGAGATTCAGCAAACCCTAAAGCTCATGGTCCACCACCACAACAGAGGAAAGGAAAACAACACACCAAAGCTGAAATGGAGGAAAATTTTCACTCTCCAACGATCACCGCCGTCATCAAAACCCATCCAAACTCCACCGCCGGAAGAGTTCATCTGCCCAATCTCCGGTAKTCTAATGGCTGACCCRGTGATCGTATCTTCCGGTCACTCCTTCGAACGAGCGTCSGTACAATCATGCAAYGATCTCAACTTTACCCCTCAACTCTCCGATGGAACCACCCCTGATTTTTCCACCGTGATCCCCAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCGTCATCCACCCTCCTCCCTCAACCCCCACACCGGTCCCTCACCGACAACCTCGTACGGACCCTCATTTTCTCATCTTCCTCCCGCAAAAACAACGCAAACGAGTTAGTGGGAGAGAGAATGCTAACAGCGAACCCTTCTTGTTCTTCTTCTTCTTCCTCCGTTGAGTCTATTGCCACGTCAGCATCGAGCTCCACCCCACCCGCTCAACTCACTGCGAAACCAAGCTTCTGCTACTCTTCACCTTCTTCCTCCGAACTCGAGCCAACAACCCCAGAAGCCGAAGAATTCATCTCGAAGCTTCGGAGCAATCAAGTCTTCTTAATCGAAGAATCTCTGCAGAATCTGAGGAAGCTCACTAGAACTAATGAGGACTCAAGGATCACACTCTGCACCCAAAGGATGCTTTCGTCTTTGCGTGGCCTCGTTGCTTCGAAGTACAAAATGGTTCAGGTGAATGCCGTCGCATGTGTCGTGAACCTCTCTCTGGAGAAAACGAACAAGGTGAGGATCGTACGGTCAGGGTTAGTTCCGCCATTGATAGAAGCTTTGAGGGTTGGATCCTCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTCAGTTTAGCGCTTGAAGACGATAATAAAACCGCGATTGGTGTTCTCGGAGCTCTTCCACCGTTGATTCACGCGCTTCGAGTTGGGACTGAGCGGACCCGGCATGACTCAGCCTTGGCGCTTTACCATTTGTCGATGGTTCAAAGTAACAGAACCAAATTGGTTAAGATTGGATCGGTTCCGGTTTTAGTTGGGATGGTTAAGTCTGGTCAGATGACGGGTCGGGTTTTGATGATTTTGGGCAATTTGGGTTGTGGGCCGGATGGGCGGGCTGCAATGTTGGATGTGGGTATGGTTGAATGTTTGGTCGGGTTGTTGGCTGGGTCCGAGTCGGTTCATGGATCAATAAAGGAGAGCTGTGTGGCGGTGCTTTACGTGTTGAGTCACGGAGGGTTGAGGTTTAAGGCCTTAGCGAAGGCGGCAGGAGTGGTGGAGGCGCTGGAGAAGGCAGAGAAGGAGGTGGGGAGTCAACGAGCGAAGGAAAAGGCAAGGAGGGTTTTCGAGATGATGAAGGGCAAAGAGGAAGAGGAGGAGGAAGACGTGGATTGGGAGGAGCTACTCGACTCCGGTCTAGGAAGCCGGAGTCACAACCAGCATGATGGCGAGTTTGGCGGGCTAAATGGGACGACCTCATCCTCTGAATTTTGA 1590 0.5176 MEIQQTLKLMVHHHNRGKENNTPKLKWRKIFTLQRSPPSSKPIQTPPPEEFICPISGXLMADPVIVSSGHSFERASVQSCNDLNFTPQLSDGTTPDFSTVIPNLALKSAISKWCHASSTLLPQPPHRSLTDNLVRTLIFSSSSRKNNANELVGERMLTANPSCSSSSSSVESIATSASSSTPPAQLTAKPSFCYSSPSSSELEPTTPEAEEFISKLRSNQVFLIEESLQNLRKLTRTNEDSRITLCTQRMLSSLRGLVASKYKMVQVNAVACVVNLSLEKTNKVRIVRSGLVPPLIEALRVGSSEAQEHASGALFSLALEDDNKTAIGVLGALPPLIHALRVGTERTRHDSALALYHLSMVQSNRTKLVKIGSVPVLVGMVKSGQMTGRVLMILGNLGCGPDGRAAMLDVGMVECLVGLLAGSESVHGSIKESCVAVLYVLSHGGLRFKALAKAAGVVEALEKAEKEVGSQRAKEKARRVFEMMKGKEEEEEEDVDWEELLDSGLGSRSHNQHDGEFGGLNGTTSSSEF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1582 529 Pfam U-box domain 48 116 IPR003613 GO:0004842|GO:0016567
Amo15g1582 529 Gene3D - 204 483 IPR011989 -
Amo15g1582 529 ProSiteProfiles U-box domain profile. 46 120 IPR003613 GO:0004842|GO:0016567
Amo15g1582 529 SMART arm_5 238 278 IPR000225 GO:0005515
Amo15g1582 529 SMART arm_5 320 360 IPR000225 GO:0005515
Amo15g1582 529 SMART arm_5 400 443 IPR000225 GO:0005515
Amo15g1582 529 SMART arm_5 279 319 IPR000225 GO:0005515
Amo15g1582 529 PANTHER U BOX DOMAIN-CONTAINING 24 514 - -
Amo15g1582 529 SMART Ubox_2 50 113 IPR003613 GO:0004842|GO:0016567
Amo15g1582 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 327 IPR000225 GO:0005515
Amo15g1582 529 SUPERFAMILY ARM repeat 210 481 IPR016024 -
Amo15g1582 529 MobiDBLite consensus disorder prediction 188 205 - -
Amo15g1582 529 MobiDBLite consensus disorder prediction 484 529 - -
Amo15g1582 529 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 24 514 - -
Amo15g1582 529 SUPERFAMILY RING/U-box 35 121 - -
Amo15g1582 529 MobiDBLite consensus disorder prediction 505 529 - -
Amo15g1582 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Amo15g1582 529 MobiDBLite consensus disorder prediction 188 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1582 Amo-Chr15 113142210 113144569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1582 1 529 U-box Gene Family AT5G40140 51.423 9.94e-171 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1582 - - lja:Lj2g3v1020040.1 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4579 05 118446498 118448658 Amo15g1582 15 113142210 113144569 hybridization
Amo15g1582 15 113142210 113144569 Amo14g3572 14 139766359 139770584 PCT
Amo15g1582 15 113142210 113144569 Amo04g2647 04 99567245 99571404 PCT