Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1580 ATGGGAGGAGGTGGCACAGAAGCTTTTCCAGATTTGGGTAAACACTGCCAGCAACCAGATTGTAAACAACTTGATTTTCTCCCTTTCACCTGTGAAGGCTGCAAGCAGGTATTCTGTTTGGAACACCGATCCTACATGTCCCATTCTTGCCCCAAGTCCGACCACAACAGCAGAAAAGTCATAATTTGTGAAACATGTTCGATTTCTATTGAGACRACAGGACATGGAGGACAGGACGAGGAGGCCATCTTGAAGAAGCACCAAAACTCAGGAACTTGTGACCCCCAAAATAAGAAGAAACCAATTTGCCCTGTAAAGCGTTGCAAGGAGGTTCTAACCTTCTCAAATTCCAGTACGTGTAAAACTTGCCACATTAAGGTGTGCCTCAAGCACCGTTTTCCCGCGGATCATGCTTGTGGTAGAGCAGCGTCGAGTCCAGTGTCAGTGTCGGTTACGGCTCCTGCTTCTGCTAGTGGATGGTGGAATAACAAGTTCTTGGCCGCTTTCGCCTCGAGGACCGAACAAGAGTGTGGCAAGAGTGGGGGAGGTAGTTCTGCTTCAGCTCCTAGAAATCCTTCTGTTAAGGCATACTGA 594 0.4798 MGGGGTEAFPDLGKHCQQPDCKQLDFLPFTCEGCKQVFCLEHRSYMSHSCPKSDHNSRKVIICETCSISIETTGHGGQDEEAILKKHQNSGTCDPQNKKKPICPVKRCKEVLTFSNSSTCKTCHIKVCLKHRFPADHACGRAASSPVSVSVTAPASASGWWNNKFLAAFASRTEQECGKSGGGSSASAPRNPSVKAY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1580 197 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Amo15g1580 197 SUPERFAMILY AN1-like Zinc finger 9 60 IPR035896 -
Amo15g1580 197 MobiDBLite consensus disorder prediction 177 191 - -
Amo15g1580 197 SUPERFAMILY AN1-like Zinc finger 95 142 IPR035896 -
Amo15g1580 197 Gene3D - 77 156 IPR035896 -
Amo15g1580 197 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Amo15g1580 197 Pfam AN1-like Zinc finger 103 142 IPR000058 GO:0008270
Amo15g1580 197 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Amo15g1580 197 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Amo15g1580 197 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Amo15g1580 197 Gene3D - 2 68 IPR035896 -
Amo15g1580 197 MobiDBLite consensus disorder prediction 175 197 - -
Amo15g1580 197 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 6 193 - -
Amo15g1580 197 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 6 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1580 Amo-Chr15 113057316 113058487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1580 1 177 C2H2 Transcription Factor Family AT3G28210 61.582 2.60e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1580 - - adu:107491409 391.349