Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1541 ATGCTCCGTCAGCGGCGCCTCTCAGCCTTGCACCGCCGTCGCACCGAAGCTCCATCACACTCCTTCCTGGATCTTCTCCCTGTGTTGCTTGCGTCTCTCCTTTCAAACCCTAACTTGCAATCCGCTAATTTAGCCAAAGTTTGGAGATCTTCTCCGTCACGCTCTCTTCGTTCCTTCTCCTCCTCCGCCGCCGCCTCTGCTGCCATTCTGGCGATGCTCCGAAGGGGCTACGCGAAGCAGGTGAAGGAGGTTCGCAATCTGTACATCCACGAAATGGAGCTGCTTCAGATCGAGAAGGAGCTCAAGGACGAAGCTTGCAGAGAATCCCTTAGAATCGCACAACAAGAATTCAGAAGAAACACTCGTATGTTTTTTCTTTTCTTCTTCCTTTCCCTCTATGAATTTCGCTGTGCACACCAAGTGTTCGATGTTTGCTTATTTCTATTTGATGGTCACAATGGAACTGCTGCTGCTATTTATGCCAAGGAGAATCTTCTAAACAACATTTTAAGTACAATTCCTTCAGATCTTAACAGAGATGAGTGGATAGCAGCATTGCCAGGGCTTTGGTTGCAGGATTTGTATATTGACTATCTTTTTTTGGGAGATTATGTTGATAGAGGACAGCACAGCTTGGAAACCATTACCTTGCTGCTTGCACCTAAGATTGAGTATCCTGAGAATGTTCACCTGATACGTGGTAACCATGAAACTGCTGACATAAATGCACTATTTGATTTTCGTATCGAGTGCATTGAAAGGATGTTAAATCTAAAAAGCTGTAAGCACTCCAAATCATTGAAAAAGAACTTCTCTCAAGAGCTTCAAAAGCTTGAGGAGTATCGCATGAACCAGAAATCAATTGATTTAATGGGTGATTACATCAAAGGCCAAGTAATAGGGTATCTGGATCAGTTTGGCACTTCACTTCCTGTTAAGATTRGAGACTATAGAAAAGACTGGAAATTGCAAGTAAATCAACTTGTTGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAGTAAAGAGCTCTCTATATTGGTAGATAGTTGGGATCTATGGAAATCATTACTCCTTGCCTTGTATATTAGAATTGTTCCTAGTCCTAGTCCTAGAAATTGA 1137 0.4257 MLRQRRLSALHRRRTEAPSHSFLDLLPVLLASLLSNPNLQSANLAKVWRSSPSRSLRSFSSSAAASAAILAMLRRGYAKQVKEVRNLYIHEMELLQIEKELKDEACRESLRIAQQEFRRNTRMFFLFFFLSLYEFRCAHQVFDVCLFLFDGHNGTAAAIYAKENLLNNILSTIPSDLNRDEWIAALPGLWLQDLYIDYLFLGDYVDRGQHSLETITLLLAPKIEYPENVHLIRGNHETADINALFDFRIECIERMLNLKSCKHSKSLKKNFSQELQKLEEYRMNQKSIDLMGDYIKGQVIGYLDQFGTSLPVKIXDYRKDWKLQVNQLVAGNYYPINLGIYLKDKSKELSILVDSWDLWKSLLLALYIRIVPSPSPRN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1541 378 Pfam Calcineurin-like phosphoesterase 191 259 IPR004843 GO:0016787
Amo15g1541 378 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL1-RELATED 190 257 - -
Amo15g1541 378 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 190 257 - -
Amo15g1541 378 SMART pp2a_7 161 358 IPR006186 GO:0016787
Amo15g1541 378 Gene3D - 303 355 - -
Amo15g1541 378 SUPERFAMILY Galactose mutarotase-like 313 354 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo15g1541 378 SUPERFAMILY Metallo-dependent phosphatases 197 257 IPR029052 -
Amo15g1541 378 ProSitePatterns Serine/threonine specific protein phosphatases signature. 232 237 IPR006186 GO:0016787
Amo15g1541 378 Gene3D - 165 288 IPR029052 -
Amo15g1541 378 PRINTS Serine/threonine phosphatase family signature 198 225 IPR006186 GO:0016787
Amo15g1541 378 PRINTS Serine/threonine phosphatase family signature 231 255 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1541 Amo-Chr15 112100912 112105967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1541 148 219 PP2C-type Phosphatase Gene Family AT1G47380 54.795 1.02e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1541 K01090 - ahf:112748460 221.861