LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1538	ATGAAGGAAGGGAATGATGGKTTTGTTAGAGCTGATCAGATTGATCTCAAGACCATTGATGAGCAGCTTGAGAGGCACCTCAACAAGGTTCTGACCATTGAGAAGAACAAGCAGAAGCAAGATGGAGAAGAACAACAACAACAACAAGATGTTGTTGCTGTTGCCACTGCCACCAAGTTGAAGAGTGTTGTCTCTTCTAGTTTCAAGAAGCAGAGGCAGGAGTGGGAAATTGACCCTTCTAACCTCATCATTAAAGGTGTCATAGCCCGTGGAACTTTTGGTACTGTCCACCGTGGTGTCTATGATGGCCAAGATGTTGCTGTTAAAATGCTGGACTATGGTGAAGAAGGGCAACGGACCGATGCTGAAATCGCAGCCCTGAGGTCGGCGTTTACACAAGAAGTTGCTGTTTGGCATAAACTTGATCATCCAAATGTGACAAAGTTCATAGGAGCAACAATGGGATCTTCAGAATTGCAGATACAAACTGATGATGGTCTAATTAGCCTGCCAAGCAATATTTGCTGTGTTGTTGTGGAGTATCTTGCTGGAGGTGCGCTTAAATCTTTCCTGATAAAGAATCGAAGAAGAAAGTTGGCTTTTAAGGTTGTCATCCAGTTGGCACTTGATCTTGCAAGAGGGCTGAGTTACCTTCATTCTCAAAAGATTGTTCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACACGCACGGTTAAGATTGCTGATTTTGGCGTCGCCCGTGTTGAAGCGTCAAATCCGAATGACATGACTGGGGAGACCGGTACACTTGGTTACATGGCTCCCGAGGTCTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGAATCTGTTTATGGGAAATATATTGCTGTGACATGCCATATCCCGACCTCAGTTTCTCGGAGATTACTTCAGCCGTTGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGTCCTAGCTCTCTAGCAAACGTGATGAAGAAATGCTGGGACGCGAATCCTGATAAACGACCTGAGATGGACGAGGTAGTTTCCTTGCTCGAGGCGATCGATACATCGAAAGGTGGAGGTATGATCCCGCCTGATCAGCAGCAGGGTTGTCTTTGCTTTCGCAAAAGCCGAGGGCCTTGA	1158	0.4534	MKEGNDGFVRADQIDLKTIDEQLERHLNKVLTIEKNKQKQDGEEQQQQQDVVAVATATKLKSVVSSSFKKQRQEWEIDPSNLIIKGVIARGTFGTVHRGVYDGQDVAVKMLDYGEEGQRTDAEIAALRSAFTQEVAVWHKLDHPNVTKFIGATMGSSELQIQTDDGLISLPSNICCVVVEYLAGGALKSFLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDANPDKRPEMDEVVSLLEAIDTSKGGGMIPPDQQQGCLCFRKSRGP*	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1538	385	PANTHER	DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED	1	379	-	-
	Amo15g1538	385	CDD	STKc_MAP3K-like	88	356	-	-
	Amo15g1538	385	ProSiteProfiles	Protein kinase domain profile.	82	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo15g1538	385	Pfam	Protein tyrosine and serine/threonine kinase	85	356	IPR001245	GO:0004672\|GO:0006468
	Amo15g1538	385	Coils	Coil	16	36	-	-
	Amo15g1538	385	Gene3D	Phosphorylase Kinase; domain 1	70	164	-	-
	Amo15g1538	385	SUPERFAMILY	Protein kinase-like (PK-like)	60	356	IPR011009	-
	Amo15g1538	385	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	1	379	-	-
	Amo15g1538	385	PRINTS	Tyrosine kinase catalytic domain signature	179	192	IPR001245	GO:0004672\|GO:0006468
	Amo15g1538	385	PRINTS	Tyrosine kinase catalytic domain signature	217	235	IPR001245	GO:0004672\|GO:0006468
	Amo15g1538	385	PRINTS	Tyrosine kinase catalytic domain signature	283	305	IPR001245	GO:0004672\|GO:0006468
	Amo15g1538	385	PRINTS	Tyrosine kinase catalytic domain signature	327	349	IPR001245	GO:0004672\|GO:0006468
	Amo15g1538	385	Gene3D	Transferase(Phosphotransferase) domain 1	183	372	-	-
	Amo15g1538	385	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	223	235	IPR008271	GO:0004672\|GO:0006468
	Amo15g1538	385	SMART	serkin_6	82	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1538	Amo-Chr15	111999918	112003437	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1538	1	317	MAP Kinase Kinase Kinase	AT5G50000	78.086	0.0	530

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Amo15g1538		PK_Tyr_Ser-Thr	1e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g1538	-		-	gmx:100809898	676.396