Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1536 ATGAAGAAAGCAATTAGCACAAGTAATGAGCCTTCCAAACTTGATCGCAAAACCATTGAGAGGAACCGCAGAATTCACATGAAATCTCTCTGCTTCAAGCTCACTTCTCTTATTCCTCCCAACCATAGATTCACACAATATTCCAAATCCAAGGACACACTAACCCAGCAAGACCAGCTGGATCTGGCAGCAAGGTACATAAAGCATATGAGAGAAAGAATAGAGGAATTGAAGAAGCAGAAGCAGCATGTCATGATGGAGTCAAAAAACAACAACAATAATACAATAATGTGCAAAAATATAGACACAAAATTGCCACTGCTTGAGCTGAGAGAATTTGGCTCCGGCATAGAAGTTGTGTTGGTTTGTGGATTGAGAAACAAGACCTTCATGTTATATGAAGTTATTAATGTTCTTGAGGAAGAAGGTGCTGAAGTTGTTACTGCAAGCTTCTCAACTGTGGGGGACAAAATATTTTACATTCTTCATGCTCAGGATAAAATATCAAGGGTTGGGGTAGAAACATCAAGGGTGCATCAGAGGCTTCAGGAGTTTATTGCTCCAATAGAAATGTGGGACTAA 582 0.3969 MKKAISTSNEPSKLDRKTIERNRRIHMKSLCFKLTSLIPPNHRFTQYSKSKDTLTQQDQLDLAARYIKHMRERIEELKKQKQHVMMESKNNNNNTIMCKNIDTKLPLLELREFGSGIEVVLVCGLRNKTFMLYEVINVLEEEGAEVVTASFSTVGDKIFYILHAQDKISRVGVETSRVHQRLQEFIAPIEMWD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1536 193 PANTHER TRANSCRIPTION FACTOR BHLH162 8 187 - -
Amo15g1536 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 87 IPR036638 GO:0046983
Amo15g1536 193 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 187 IPR015660 GO:0003700|GO:0006357
Amo15g1536 193 Pfam Helix-loop-helix DNA-binding domain 16 70 IPR011598 GO:0046983
Amo15g1536 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 70 IPR011598 GO:0046983
Amo15g1536 193 Gene3D - 12 100 IPR036638 GO:0046983
Amo15g1536 193 Coils Coil 60 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1536 Amo-Chr15 111966092 111968242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1536 1 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.846 1.16e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo15g1536 HLH 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1536 - - gmx:100790403 244.202