Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1532 ATGATGGCAAAGAGTCGTATAAAGGAAGGTGATCAATCTGAGGTTTTAAGTGTTGAGTATAAGTACAGTTCTAATGAAAGTGATGATATGGTGGATGTAACTGTAGATGAAGCAGAGGCAGATATAATTAATACTGATGGTTGTGAAAAGTTGATAACTGATTTGACCATCGAAGACATATGGGGACTGGTATTTGATACAGAATCTCAAGTTTGTGAATTTTATGTCAAATATGCCAAGTGCTATGGATTTGCGTCCCGGAAAGACTTGAATGCAGTGGATGCTAATGGCAACATTAATACAAGAAAGTTGGTTTGTAATAAAGCAGGAGAAAGAAATTGGAAGCACCTTAAAATGGACAATCGGCAAAGGGAGCATAGGGCAATTACTCGTGTCAACTGCAGGGCGAGGATTCGGTTCATTTGTCACTATAGAACGGATGAGATAGAAGCAGCAGGTGCCTTAAATGTGACTGAATGCCTAAACAGTGGAGACATTGTTGAGTACAACACGAGTGAGTATTTTAATCAGCAATGGGAATTTAAAGTATCTTACAATAAAGACAAGGACCTGTTTGCGTATGAGTGCAGGCTATTTGAGACTCGTGGATTACCGTGTTCCCACATCTTTGGGGTCTTGAAGCATCGCAATGCAAAATGCGTCTCTACATCTCTTATCCTGAAAAGATGGACAAGAAATGCAAAAAGTGATTTTATATGCTCAATTGGTGAGCAAGACACCGCTGATAATATAGTGCCCACACTTAGATGCGGTGCAATGGCATCTATTTGTTGGAAGCTTTGTGATATTTCTTCCAAAAATTCAGCCAACTATAGGGAAGACTCAGTGGTCCTTCCTTATCAACCTTATGGTGGAGTCCTCCCTATTCCTTTTCATCCTGTTCCAAATGGCATGGCGTACTTCAACCAATATCCTTCTACTGCCGGAATTACATCATATCCTCAGTTTTCTCATGTCTCGTCTCCATCTATTCTGAAGTTATCCTTGAGGCTTCAAGTTCTTTCACTGTGCTGTGCTGGATCTAAGGCTATCAATGATCCAAAAGGGCATGAGAGTCATGGAGTTCATCTCTGTCACAAATGTCGATGGCCTTTCCCGAATCCACATCCAAGTGCCAAGCACAGGCGTGCTCACAAGAAGATCTGTGGAACCATTGAAGGTCCAGAGGTCTTGAATATAGGCAACAAGGAGAAGGATGATAGTGAAATTGGAGATAAAATAAATAGATCAGAAGATGAGGCATGGAGGCTGTGGTGTGAAGAGAGGCCATTGGAGCTTATAGATGAATCATTAACTGACTCAGTTGCTGTAGCAGAATCTGAAGTGCTAAGATGCATTCACATAGGGCTTTTATGTGTACAAGAGAGACCAGAGAATAGGCCAGACATGTCAGCCATAGTTCTAATGCTGAATGGTGAGAAACCATTACCAAGGCCAAGGGACCTGCTTTTTATCCACATCAGTTTGGCTTTTCATCAAGGAATTGTGCAGTAA 1515 0.4132 MMAKSRIKEGDQSEVLSVEYKYSSNESDDMVDVTVDEAEADIINTDGCEKLITDLTIEDIWGLVFDTESQVCEFYVKYAKCYGFASRKDLNAVDANGNINTRKLVCNKAGERNWKHLKMDNRQREHRAITRVNCRARIRFICHYRTDEIEAAGALNVTECLNSGDIVEYNTSEYFNQQWEFKVSYNKDKDLFAYECRLFETRGLPCSHIFGVLKHRNAKCVSTSLILKRWTRNAKSDFICSIGEQDTADNIVPTLRCGAMASICWKLCDISSKNSANYREDSVVLPYQPYGGVLPIPFHPVPNGMAYFNQYPSTAGITSYPQFSHVSSPSILKLSLRLQVLSLCCAGSKAINDPKGHESHGVHLCHKCRWPFPNPHPSAKHRRAHKKICGTIEGPEVLNIGNKEKDDSEIGDKINRSEDEAWRLWCEERPLELIDESLTDSVAVAESEVLRCIHIGLLCVQERPENRPDMSAIVLMLNGEKPLPRPRDLLFIHISLAFHQGIVQ* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1532 504 ProSitePatterns Zinc finger C2H2 type domain signature. 365 385 IPR013087 -
Amo15g1532 504 ProSiteProfiles Zinc finger SWIM-type profile. 181 217 IPR007527 GO:0008270
Amo15g1532 504 Pfam FAR1 DNA-binding domain 73 140 IPR004330 -
Amo15g1532 504 Gene3D Transferase(Phosphotransferase) domain 1 374 488 - -
Amo15g1532 504 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 419 494 - -
Amo15g1532 504 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 419 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1532 Amo-Chr15 111798098 111803950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1532 401 491 Receptor kinase-like Gene Family AT4G11480 42.553 3.85e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo15g1532 FAR1 2.2e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1532 - - aip:110272093 300.827