LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1522	ATGGTGGCAAGATCATACACCAATTTGTTGGACTTAGCGTCAGGGAATATTTTAAACACCCCTCAAACTCCAAGAGCACTTCCGCGAGTTATGACTGTTCCCGGAGTTATCTCTGACGTAGAAAGCAAGCAAAGCAGTGAGGATTCTTTCCAGTCGGAACAGCGTCAGAAGATAATTATTGTATCAAGTTTTCTTCCTCTTGATGCTAAGAAGGATAAGTCTTCTGGAAAATGGAGTTTCAGTTATGACAAGGACTCAATTTTTTGGCAGTTAAAAGATGGTCTCCCTCCTGAAGTTGATGTTGTTTATGTGGGATCTCTGACGGTTGATGTTGATGCTAGTGAGCAAGAGCAAGTTTCTAATCAGTTGCTGGAGGAATTCAAGTGTGTGCCTACTTTTCTTCCTTCCGAAATCGAGGATCAGTTCTATAATGGATTCTGCAAGCAACATTTATGGCCTCTATTCCATTACATGCTGCCAATGTATCCAGGTTATAGCAATCGCTTCGATAGGACACTGTGGCAGGCTTATGTTTCTGCCAATAAGATATTTGCAAATAAAGTCACAGAGGTAATTAACCCGGACATAGATTATGTTTGGGTTCATGATTACCAATTAATGGTTCTTCCAACATTCCTGCGAAAGCGTTACAGCAGGATCAAGCTTGGTTTCTTCTTGCATAGTCCCTTTCCTACATCCGAGATATATCGAACTCTGCCGGTCAGAGGTGAAATTTTGAAAGCTCTGCTAAATGCAGATTTAATTGGTTTTCACACATTTGATTATGCTCGCCATTTTCTCTCCTGCTGCAGTCGAATGCTTGGCTTGGAATACGAGTCCAAGAGGGGCTACATTGGGCTCGAGTACTTGGGCCGAACAATATACGTCAAAATATTACCTGCTGGGATTCATATGGGAAGACTTCAATCTGTCTTAGACCATACTTCTTCTACTACCAAAGCAAGAGAAATCTATGAACAATTCAAGGGGAAACAACTTATTGTTGGTGTTGATGATATGGACATATTTAAAGGTATAAGTTTAAAGCTCTTGGCCCTTGAACAACTCCTGGAGGAATATCCGACACTTCGTGGCAAATTGGTCATGGTCCAAATCTTGAATCCACTGAGGGGTTCTAGCAAGGATATTGAGGATGCAAAGGAGGAGGCATACATCACTGCTAACAGGATAAATCAAACTTTTGGTTTTCAAGGTTATGAACCTGTCATCATCATCGATCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTATGGCAGAATGTTGCATTGTGAATGCGTTGCGCGACGGAATGAACTTGGTTCCGTACAAGTACATTGTCTGCAGGCAGGGAAGTCCTAAAATGGATGAAGCTTTAGAAATCGACCATGATTCTGAGAGGACGAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCCCCATCTCTCAGTGGAGCAATCAGGGTGAATCCATGGGACATTAGTGCTGTAGCTGATGCTCTATATTCGGCTGTTACAATGTCTAATGCAGAGAAAATTTTGCGGCATGAGAAGCACTATAGATATGTTAGTTCTCATGATGTGGCTTACTGGGCTAAAAGTTTTGAACAAGATCTTGTGATGTCATGCAAGGATCACCGTAGTAAGAACCATTGGGGCCTCGGCTTCGGCCTGAATTATCGAGTCTTGTCCCTCTCTCCCAATTTCAGGAAGCTTTCGGATGGCCACATTGTCTCTGCATATAAACGTACAAGTCACAGGGCAATCTTTTTGGATTATGATGGCACAGTTGTACCTCAATCTTCCATTGATAAATCACCCAGCCCTCAGGTTATATCGGTGCTGAATGATCTTTGCAGTGATCCTAAGAATACAGTGTTTATTGTCAGTGGCCGCGGGAAATCCTCATTGGGTGATTGGTTTGATCAATGCAAGAATCTTGGTATCGCAGCTGAACATGGCTATTTTATCAGGTGGGGTAACAAGTCAAGCTGGGAAATGAGCCACATAAGCACAGATTTTGCTTGGAAAAAGATTGCTGAACCTGTGATGAGGTCGTATACCGAAGCCACTGATGGCTCGTATATAGAGACCAAAGAGAGTGCCTTGGTGTGGCATTACTATGATGCCGACCCGAATTTTGGATCTTGGCAAGCCATGGAGCTTTTGGATCACCTGGAGAGTGTTCTTGCAAATGAGCCTGTGGTTGTTAAGAAGGGACAGCATATTGTTGAAGTCATGCATCAGGGAATTACAAAAGGGCTAGTTGCACAAGACGTGCTGTCTAAGCTAGCCAGTGCTGGAAAATCCCCAGATTTTGTGCTGTGCATTGGGGATGACAGATCCGACGAGAACATGTTTGAGGCCATATTAACCAAATCTTATAATGCAAACACCTCTGCAGCACCAGAAATCTTTGCATGTACCGTCGGGCAGAAACCAAGCAAGGCGAGGTACTACCTAGATGATACGGCCGAGGTGACGATGCTACTTGAAGCTCTTAGTACTGCTTCAGAGCCTCTAACAGCATTTTCTGCAGAAGCTCCTCCTCAAAATGAAAAATCTTGCTTTGAGAATATTGGTCACGTGCCTGATTTAGTGTGA	2610	0.4322	MVARSYTNLLDLASGNILNTPQTPRALPRVMTVPGVISDVESKQSSEDSFQSEQRQKIIIVSSFLPLDAKKDKSSGKWSFSYDKDSIFWQLKDGLPPEVDVVYVGSLTVDVDASEQEQVSNQLLEEFKCVPTFLPSEIEDQFYNGFCKQHLWPLFHYMLPMYPGYSNRFDRTLWQAYVSANKIFANKVTEVINPDIDYVWVHDYQLMVLPTFLRKRYSRIKLGFFLHSPFPTSEIYRTLPVRGEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYLGRTIYVKILPAGIHMGRLQSVLDHTSSTTKAREIYEQFKGKQLIVGVDDMDIFKGISLKLLALEQLLEEYPTLRGKLVMVQILNPLRGSSKDIEDAKEEAYITANRINQTFGFQGYEPVIIIDRHVPFYEKAAYYAMAECCIVNALRDGMNLVPYKYIVCRQGSPKMDEALEIDHDSERTSALVVSEFIGCSPSLSGAIRVNPWDISAVADALYSAVTMSNAEKILRHEKHYRYVSSHDVAYWAKSFEQDLVMSCKDHRSKNHWGLGFGLNYRVLSLSPNFRKLSDGHIVSAYKRTSHRAIFLDYDGTVVPQSSIDKSPSPQVISVLNDLCSDPKNTVFIVSGRGKSSLGDWFDQCKNLGIAAEHGYFIRWGNKSSWEMSHISTDFAWKKIAEPVMRSYTEATDGSYIETKESALVWHYYDADPNFGSWQAMELLDHLESVLANEPVVVKKGQHIVEVMHQGITKGLVAQDVLSKLASAGKSPDFVLCIGDDRSDENMFEAILTKSYNANTSAAPEIFACTVGQKPSKARYYLDDTAEVTMLLEALSTASEPLTAFSAEAPPQNEKSCFENIGHVPDLV*	870

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1522	869	Gene3D	Glycogen Phosphorylase B;	310	526	-	-
	Amo15g1522	869	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	57	541	-	-
	Amo15g1522	869	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	590	791	IPR006379	-
	Amo15g1522	869	TIGRFAM	T6PP: trehalose-phosphatase	588	836	IPR003337	GO:0003824\|GO:0005992
	Amo15g1522	869	SUPERFAMILY	HAD-like	589	836	IPR036412	-
	Amo15g1522	869	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	844	IPR001830	GO:0003824\|GO:0005992
	Amo15g1522	869	Pfam	Glycosyltransferase family 20	57	541	IPR001830	GO:0003824\|GO:0005992
	Amo15g1522	869	Gene3D	-	719	846	IPR023214	-
	Amo15g1522	869	Gene3D	-	588	702	IPR023214	-
	Amo15g1522	869	Pfam	Trehalose-phosphatase	592	826	IPR003337	GO:0003824\|GO:0005992
	Amo15g1522	869	CDD	HAD_TPP	590	829	-	-
	Amo15g1522	869	Gene3D	Glycogen Phosphorylase B;	48	309	-	-
	Amo15g1522	869	CDD	GT20_TPS	57	541	IPR001830	GO:0003824\|GO:0005992
	Amo15g1522	869	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED	1	844	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1522	Amo-Chr15	111525383	111532010	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1522	1	840	Trehalose Biosynthesis Gene Families	AT1G23870	66.311	0.0	1211

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g1522	K16055		-	gmx:100812031	1361.67