Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1506 ATGGGCGGCAACGGCAAGCACCGTTGGAGAATTTCGTTCCATCGTAATTCGAAGCTGGAGCAACAGCAGCCCAAGCATCCCCCTCCGAACGAATTCATATGCCCCATTTCCGGTTCATTAATGTCCGACCCGGTCGTCGTCGCTTCCGGACAAACCTTCGAGCGGCTTTCCATCCAAGTCTGCAACGACCTCTCCTTCTCCCCCACCCTACCCGACGGAACCCGACCCGATTTCTCAACCATTATCCCCAATCTTAACATCAGGACCAGCATCCAAAGCTGGTGCCGTAAAACCAAGACCGTACACCCGCCCGCACCGGATTACTCCTCACTCGAGCGCATCGTCAAGGACGCAATGGCCGCTGCAGCTCCTCCGCCCCCTCCGTCGGAGCCTGACATTAGGGTTTCTGAAAAGGAGCTCCTGAAGGCGGTGCCGGACAATCCGCCGGTGATATTCTCCCACGCCGCCACTGAGTTAGGTCCCCGAGTCAACCACTTCAACTCGGGATCCTCCGAGGAGTCCGTCGTCATCGGTGGCGCGAGTCCGGGTACTCCGCTTCCGTTCACGGTTCGGCCGACGTGCTTCTCGTCGTCGTCCTCCGTCTCCTCCGTTGAAATTACGGAGGTCGAGATCCAAGGGCAAAACCCTAGCGGACCTCTTTCAGAGGAAGAAGAAAAGCTCGTGGCGAAGATGAAGAGCAACGAGGTCTTCGAGCAAGAAGAAGGAGCGATCTCGCTTCGGAACCTCACGCGGAGCAGCGAGGAAGCAAGGGTTTCACTCTGCACGCATCGAGTCCTCTCCCCTCTGCGTTCTCTCGTAGCATCGAGGTACGGCGTCGTGCAGGTCAACGCTGTTGCCTCACTGGTCAACCTTTCGCTTGAGAGACAAAACAAGGTGAGGATCGTGCGGTCAGGATTCGTTCCGTACCTGATCAACGCGCTCAAGGGTGGATCCTCTGAGACGCAGGAACACGCTGCAGGCGCGCTTTTCAGTTTAGCTTTGGATGATGATAATAAGATGGCGATTGGGGTCCTCGGCGCGTTGCAGCCTCTTATGCACGCGCTCCGATCCGAGTCCGAGCGAACTCGGCATGACTCGGCACTCGCGCTGTACCACTTGACCCTGGTTCAGAGCAACCGGGTCAAGCTTGTGAAACTCGGCGTGGTCCCCACCTTGCTGTCGATGGTGAAATCTGGAACCTTAGCGAGTAGGGTTCTGTTGATTCTTTGTAACCTTGCGGTTTGCATGGAAGGGAGGACGGCGATGTTGGATGCTGATGCGGTGGAGTGTTTTGTGGGATTGTTGAGGGAGAACGAGTTGGACTCGGAGTCGACTCGGGAGAACTGTGTGGCGGCGCTGTATGCGCTGAGTCACAGGAGCCTGAGATTCAAGGGGCTGGCGAGGGAGGCGAGGGCCATGGAGGTGCTGAAGGAGGTGGCGGAGGTGACGGGGACCGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGGGCTGCCGGTGATGGGGATGATGATGGGTCGGAGCATGATGGGGTTTTGGAATCCGGCGGGTTGACTCGGATGAGGTACCGAGTTGGCGGCAGTGGTGGCAGGAACAATGCCAACACCACCACGTTTTAG 1629 0.577 MGGNGKHRWRISFHRNSKLEQQQPKHPPPNEFICPISGSLMSDPVVVASGQTFERLSIQVCNDLSFSPTLPDGTRPDFSTIIPNLNIRTSIQSWCRKTKTVHPPAPDYSSLERIVKDAMAAAAPPPPPSEPDIRVSEKELLKAVPDNPPVIFSHAATELGPRVNHFNSGSSEESVVIGGASPGTPLPFTVRPTCFSSSSSVSSVEITEVEIQGQNPSGPLSEEEEKLVAKMKSNEVFEQEEGAISLRNLTRSSEEARVSLCTHRVLSPLRSLVASRYGVVQVNAVASLVNLSLERQNKVRIVRSGFVPYLINALKGGSSETQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVKSGTLASRVLLILCNLAVCMEGRTAMLDADAVECFVGLLRENELDSESTRENCVAALYALSHRSLRFKGLAREARAMEVLKEVAEVTGTERAREKAKRILQMMRAAGDGDDDGSEHDGVLESGGLTRMRYRVGGSGGRNNANTTTF* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1506 542 Gene3D - 403 507 IPR011989 -
Amo15g1506 542 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 305 342 IPR000225 GO:0005515
Amo15g1506 542 PANTHER U BOX DOMAIN-CONTAINING 1 533 - -
Amo15g1506 542 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 533 - -
Amo15g1506 542 SMART arm_5 415 458 IPR000225 GO:0005515
Amo15g1506 542 SMART arm_5 335 375 IPR000225 GO:0005515
Amo15g1506 542 SMART arm_5 294 334 IPR000225 GO:0005515
Amo15g1506 542 SMART arm_5 376 414 IPR000225 GO:0005515
Amo15g1506 542 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Amo15g1506 542 Gene3D - 298 402 IPR011989 -
Amo15g1506 542 Pfam Armadillo/beta-catenin-like repeat 335 374 IPR000225 GO:0005515
Amo15g1506 542 Pfam Armadillo/beta-catenin-like repeat 296 333 IPR000225 GO:0005515
Amo15g1506 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Amo15g1506 542 SUPERFAMILY RING/U-box 24 102 - -
Amo15g1506 542 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Amo15g1506 542 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Amo15g1506 542 SUPERFAMILY ARM repeat 226 499 IPR016024 -
Amo15g1506 542 CDD RING-Ubox 33 80 - -
Amo15g1506 542 Gene3D - 224 297 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1506 Amo-Chr15 110986135 110988802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1506 1 542 U-box Gene Family AT5G65200 55.851 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1506 - - aip:107643932 1023.46