Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1495 ATGGCATCCGAGCCTGACGTTTTCGAAAGATTTGTTAGAAACAGAGATATGACTCTGTTTTTGCCTTTCTTCTTTGGCTTCTCTGATTCTCAATCTCGGGATTCTTCATCGCAAGACCAAGATAACGACGAAACGGGAGAAAGGACCACCGATGCTCCCAACCGAGAGAGGATCATACTAGTGAACCCCTTCACGCAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCCGCAAAGCTGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCGAAGAAGGTGAAGCTGAAGTAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGCAGGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGGAAAAAAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAGAATCGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTTAACAGGGGTATTAGTAGGAGACATGACCACGATCAGAATCAGAATCAGAATCAAAATCAAGATTCTTCTGGTGATGGTGATGATGATCCTAATTTGGGTGATTATGCATCATCAACTGCTGGAGGTGATGCTGAAGCAGAAAATTAGGGTTCTTTTTTTCCTTTTTTAA 780 0.4487 MASEPDVFERFVRNRDMTLFLPFFFGFSDSQSRDSSSQDQDNDETGERTTDAPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSRKAGRPPATKESIDAMPSFVIEEGEAEVGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCRYEMPVEEKDEGKKGIVKEKKNKKEEKERGEESVMVKFGLVFLLTGVLVGDMTTIRIRIRIKIKILLVMVMMILIWVIMHHQLLEVMLKQKIRVLFFLF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1495 259 SMART ring_2 120 160 IPR001841 -
Amo15g1495 259 SUPERFAMILY RING/U-box 104 166 - -
Amo15g1495 259 PANTHER - 12 176 - -
Amo15g1495 259 MobiDBLite consensus disorder prediction 29 54 - -
Amo15g1495 259 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Amo15g1495 259 MobiDBLite consensus disorder prediction 36 54 - -
Amo15g1495 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Amo15g1495 259 Pfam Ring finger domain 119 161 IPR001841 -
Amo15g1495 259 CDD RING-H2_PA-TM-RING 119 161 - -
Amo15g1495 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1495 Amo-Chr15 110548594 110549833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1495 7 174 C3H Transcription Factor Family AT1G26800 55.952 7.35e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1495 - - adu:107489464 293.123