Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1490 ATGTCTTCTCCAACACATACACCAACACCAACCATGGATCCCTCTTCACGCCACTACTCGTACAATCGCAAACAGAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAAATTGTATAATAAGGACAGCATCCACTTGATCGGCCTCGACGATGCAGCTTCTCGATTAGGTGTTGAGAGGCGGCGGATCTATGATATAGTGAACGTCTTAGAGAGTGTCGGGGTGCTTTCTAGAAAAGCTAAGAATCAGTATACTTGGAAAGGGTTTGCTGCTATTCCTGGGGCTTTACAAGAACTCAAGGACGAGGGTTTGAGGGAGAATCCCTATGGTTTTGATGGTGATAATGAAATTGCAAAATTGTCAGATGACGAGGATGATGAAGAAACAATGTCAAATCCCAGTAATGGAAGTCAGAATGACAAATCAAATCCCGATGCCTCACTTATAAAATCATTGAAGCCTGAAAACAGAAGGGAAAAATCTCTGGCGCTTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATATCGAAATGATTTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGAACAAAAGTCAGACGCTTATATGATATTGCAAATGTTTTGTCCTCCATGAATCTAATCGAGAAGACCCATACAACAGACACAAGAAAACCAGCATTCAGGTGGCTTGGTTTAAGAGGGAAACCATGGAGTGAGTCAGGTGACTCTGCTCTAAATTCGAATCACAGTGGCGAGTCAAGGAAAAGGATGTTTGGTGAAGACATCACCAACATTAGCTTCAAGAGGAACAAAGTGGATCTGTCTATGAATGCTGAGAATAGCTGCAAGAGTTACTCCAAGATGCAAGACCAACTCGAAAACGACGATGATAGTTGTTGGCAAGCTCACACGGATAAAGGCACCGTGAAACAAGAAGGAAAACAGAATTCAAAGGGCTACCATTTTGGTCCTTTTGCTCCAGAGTATGTTTCCAAGAATGGTGGAGCCTCTGAGAATACTAATGTGAAGCAGGTTCATGATTGGGAGAGTCTCTCAAATGTGTATCGTCCTCGGTATCAAAATCAAGCTTTGAGAGACCTCTTCTCCCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCAGGGAAAAGGCCAATACAAATTTTATAG 1194 0.4238 MSSPTHTPTPTMDPSSRHYSYNRKQKSLGLLCTNFLKLYNKDSIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGALQELKDEGLRENPYGFDGDNEIAKLSDDEDDEETMSNPSNGSQNDKSNPDASLIKSLKPENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKPWSESGDSALNSNHSGESRKRMFGEDITNISFKRNKVDLSMNAENSCKSYSKMQDQLENDDDSCWQAHTDKGTVKQEGKQNSKGYHFGPFAPEYVSKNGGASENTNVKQVHDWESLSNVYRPRYQNQALRDLFSHYMEAWKSWYSEVAGKRPIQIL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1490 397 PANTHER TRANSCRIPTION FACTOR E2F 16 388 IPR015633 GO:0000978|GO:0006357
Amo15g1490 397 SUPERFAMILY "Winged helix" DNA-binding domain 159 238 IPR036390 -
Amo15g1490 397 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 16 388 - -
Amo15g1490 397 MobiDBLite consensus disorder prediction 105 148 - -
Amo15g1490 397 Pfam E2F/DP family winged-helix DNA-binding domain 159 237 IPR003316 GO:0005667|GO:0006355
Amo15g1490 397 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Amo15g1490 397 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Amo15g1490 397 SMART E2F_TDP_2 157 237 IPR003316 GO:0005667|GO:0006355
Amo15g1490 397 SUPERFAMILY "Winged helix" DNA-binding domain 22 86 IPR036390 -
Amo15g1490 397 MobiDBLite consensus disorder prediction 131 146 - -
Amo15g1490 397 Gene3D - 18 90 IPR036388 -
Amo15g1490 397 Gene3D - 153 239 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1490 Amo-Chr15 110323789 110330070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1490 18 394 E2F-DP Transcription Factor Family AT3G48160 59.162 7.19e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo15g1490 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1490 K09391 - qsu:112020170 518.079