Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1461 ATGGGTTGGTTTACCAAGYTGCTTAAGGGATCCAACCATAAATCTTCGAGAGGAAAATATCATGGGAAACATGAAAATTCCATGGATGATTTGACAGATGTTGAGAGAGAAGAAATTGATCGTGCAATTGCRCTCTCTCTTTCGGAGGAAGATCCGAAAGGGAAAAAAGTSATTGAGGACGACCCTCAATCTTCTGATGATGAACAACTWTGTGAACTTACTGATGAAGATGAATATCATGGTGAAGTTYAACAACATGAAGAYTTAAGRAATCATCACAAAGAYGAAGATGAATCTGTTGGTGAAGTTGAGGAAGAGGAAGATGACCATCTTAATAACATTCAACAGGATAATGACAAGCATCTTGCAGAAGCGCAGCTTGAGGAAGATGAACAACTTGCCAGAGCACTTCAAGAAAGTTTGAACATTGATTCAGACAGAGCTGAAAGAGATTCTTTATTTCAACCATTTCCACACCTCCTTCGACCTGTATACAGAACCTGTGCTGGCTGCAATTCAGAGATTGGCCATGGCAGATTTTTGAGTTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGTAATTTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGTCGTTACCATAAATCTTGCTACAAGGAGCTGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCACCAAATTCAGCTGGACTCATTGAGTATAGAGCACATCCTTTCTGGATGCAGAAATACTGTCCTTCACATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGTCAAGGGATACAAAGTATCTRTTGCTWGATGACGGTCGAAAGTTGTGCCTAGAGTGTCTAGACTCAGCTATTATGGATACGCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAATTCTATGAAGGTTTAAATATGAAAATAGAACAGCAAGTTCCAATGCTTTTAGTTGAGAGACAAGCACTCAACGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCGGAAACAAGAGGACTTTGCTTGTCGGAAGAGCAAACTGTCGCCACTATTTTAAGAAGACCAAGGATAGGGGCAGGATACCGAGTCATAGATATGATAACTGAGCCTTACAGGCTAATCCGCCATTGCGAAGTGACAGCCATACTTGTTTTGTTATTGACGGGTTCAATCCTGGCCCATGAGATGATGCATGCTTGGCTTAGGCTTAAAGGCTATGGCAATTTAAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTGCTAGCTCACATGTGGCTAGATTCAGAGATCTACGCTGGTTCAGGAAGTGATAGTGCATCATCGTCCTCGTCCTCATCATCATCCTCATCCTCACCTTCCTCTTCTACATCATCAAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAACTTGGTGAGTTTTTCAAACACCAGATTGAGTCCGATCGTTCATCGGCTTATGGAGATGGATTCAGAGAGGGGAACCAAGCTGTGCTCAAGTATGGTTTAAGAAGTACCCTTGATCATATTCGACTAACCGGAAGTTTTCCATACTGA 1602 0.422 MGWFTKLLKGSNHKSSRGKYHGKHENSMDDLTDVEREEIDRAIALSLSEEDPKGKKVIEDDPQSSDDEQLCELTDEDEYHGEVXQHEDLRNHHKDEDESVGEVEEEEDDHLNNIQQDNDKHLAEAQLEEDEQLARALQESLNIDSDRAERDSLFQPFPHLLRPVYRTCAGCNSEIGHGRFLSCMGGVWHPECFCCHACNLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVATILRRPRIGAGYRVIDMITEPYRLIRHCEVTAILVLLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYAGSGSDSASSSSSSSSSSSSPSSSTSSKKGKRSDFEKKLGEFFKHQIESDRSSAYGDGFREGNQAVLKYGLRSTLDHIRLTGSFPY* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1461 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 253 - -
Amo15g1461 533 MobiDBLite consensus disorder prediction 453 478 - -
Amo15g1461 533 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 128 147 IPR003903 -
Amo15g1461 533 MobiDBLite consensus disorder prediction 21 63 - -
Amo15g1461 533 Pfam Protein DA1 317 528 IPR022087 -
Amo15g1461 533 SMART uim 34 53 IPR003903 -
Amo15g1461 533 SMART uim 128 147 IPR003903 -
Amo15g1461 533 Pfam LIM domain 168 222 IPR001781 -
Amo15g1461 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 193 - -
Amo15g1461 533 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 94 533 - -
Amo15g1461 533 MobiDBLite consensus disorder prediction 1 129 - -
Amo15g1461 533 Gene3D Cysteine Rich Protein 164 225 - -
Amo15g1461 533 ProSitePatterns LIM zinc-binding domain signature. 168 202 IPR001781 -
Amo15g1461 533 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 90 - -
Amo15g1461 533 ProSiteProfiles LIM domain profile. 166 226 IPR001781 -
Amo15g1461 533 SMART lim_4 167 219 IPR001781 -
Amo15g1461 533 Coils Coil 111 140 - -
Amo15g1461 533 MobiDBLite consensus disorder prediction 76 99 - -
Amo15g1461 533 CDD LIM_DA1 168 220 - -
Amo15g1461 533 PANTHER PROTEIN DA1-RELATED 2 94 533 IPR045218 -
Amo15g1461 533 PANTHER PROTEIN DA1-RELATED 2 1 90 IPR045218 -
Amo15g1461 533 MobiDBLite consensus disorder prediction 113 129 - -
Amo15g1461 533 MobiDBLite consensus disorder prediction 453 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1461 Amo-Chr15 109568824 109575631 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo15g1461 DA1-like 4e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1461 - - gmx:100806605 859.366