Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1459 ATGGGAGATCCCTACCCACTTCATGGAACTTTGGTTAGGACGGGTTCCTTATCATTGGAACTATATGCCAGTAGTTCTAAAAGAATTGAATTGGAATTTGTAGTTCATTTATTCAACTTGGAACATAATGATTCTGACATTAAAAGGATAAAACTAGGAGGAACAATCAACGAAAATGATGCTTCAAAAACGGAAGTAGAAGTAAGTTTAGTGGCTGGCGACAAGTTAGCCCAACAAAGTAGCAAGTCCATTGAACCACCCAAACAAGATTATATCCATGCAAGAAGAGAAAAGATCAATGAGAGGATGAAAATTCTTCAGGATTTGGTCCCAGGGTGTAACAAGGTAATTGGTAAAGCTCTTGTCCTAGATAAAATCATCAATTATATTCAGTCACTACAGCGACAAGTTGAGTTCCTGTCAATGAAGCTTGAGGCAGTTAATTCAAGATTGAGCATGAACCCTACAATTGATGGGTTCTCTTCAAAAGATGTTAGTTTATCAACTTTAATCTGGCAATCATATTAG 528 0.3693 MGDPYPLHGTLVRTGSLSLELYASSSKRIELEFVVHLFNLEHNDSDIKRIKLGGTINENDASKTEVEVSLVAGDKLAQQSSKSIEPPKQDYIHARREKINERMKILQDLVPGCNKVIGKALVLDKIINYIQSLQRQVEFLSMKLEAVNSRLSMNPTIDGFSSKDVSLSTLIWQSY* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1459 175 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 133 IPR011598 GO:0046983
Amo15g1459 175 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 152 IPR036638 GO:0046983
Amo15g1459 175 Pfam Helix-loop-helix DNA-binding domain 95 134 IPR011598 GO:0046983
Amo15g1459 175 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 168 IPR024097 GO:0006355
Amo15g1459 175 Coils Coil 130 150 - -
Amo15g1459 175 SMART finulus 93 139 IPR011598 GO:0046983
Amo15g1459 175 PANTHER TRANSCRIPTION FACTOR BPE 36 168 - -
Amo15g1459 175 Gene3D - 93 157 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1459 Amo-Chr15 109385855 109387263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1459 78 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 63.964 1.65e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo15g1459 HLH 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1459 - - qsu:112014090 177.178