Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1424 ATGGGCATGGATTACTACAACATTTTGAAAGTGAACCGAAACGCGAGTGACGAGGACCTGAAGAAAGCGTACAAGAGACTCGCAATGATCTGGCACCCCGACAAGAACCCCCTCAACAAGTCCGAAGCTGAGGCCAAATTCAAACGTATCTCCGAAGCATACGATGTTCTCAGCGACCCTCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGGCTCTCAAGTCCGGTCAGTTCCCCCCGCCTCCGCCGTCGTCGTCGTCGTCATCATCTTCCTACTATTCTTCTTCCTCTTCTTCGCGCCCTTATCAGAACGGCAGCGCACACCAACACCACCAGCGCCAGAACCCTGGCACGTCGTCGTCATCCTTTCGGTTTAATCCCCGCGATGCTGACGACATTTACGCCGAGATCTTCGGCAGCGAAGGGGGTGACGTGGGCAGCAGTGGGGCGAGGGGAGGTGGTGGCGCGCGGAGGGATGCGTTCTTTAAGACGTCGAATGGGTTCGCCGGGGCGCCGAGGAAGGCTGCTGCTGTCGAGAACGTGCTGCCGTGTAGCTTGGAGGAACTATACAAGGGAATCAAGAAGAAGATGAAGATCTCCAGAACAGTCTGTGATACTTTTGGAAAGTTCCGGAATGTGGAGGAGATTTTGACAATTGAGATAAAACCTGGATGGAAAAAAGGAACAAAGGTTACTTTCCCGGAGAAGGGTAACCAGGAGCCAGGTGTCATCCCAGCCGATCTTGTTTTTGTGATAGATGAGAAACCACACATTCTATATAGAAGGGATGGTAATGACTTGGTGATACACCAGGAGATATCACTTTTGGAGGCTCTTACAGGTAAAACTTTGGACTTGACAACTTTGGATGGAAGGAGTCTAATGATCCCACTCACAGATATTATTAAACCTGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCCATATCGAAAGAACCTGGGAAAAAGGGGAATTTGAGAATTAAGCTTGATGTCAAGTATCCTTCAAGGCTAACTCCAGAGCAGAAATCTGATCTCAGGAGAGTATTGGGTGGAGTCTCATAG 1071 0.5005 MGMDYYNILKVNRNASDEDLKKAYKRLAMIWHPDKNPLNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPPSSSSSSSSYYSSSSSSRPYQNGSAHQHHQRQNPGTSSSSFRFNPRDADDIYAEIFGSEGGDVGSSGARGGGGARRDAFFKTSNGFAGAPRKAAAVENVLPCSLEELYKGIKKKMKISRTVCDTFGKFRNVEEILTIEIKPGWKKGTKVTFPEKGNQEPGVIPADLVFVIDEKPHILYRRDGNDLVIHQEISLLEALTGKTLDLTTLDGRSLMIPLTDIIKPGAEVVVPNEGMPISKEPGKKGNLRIKLDVKYPSRLTPEQKSDLRRVLGGVS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1424 356 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Amo15g1424 356 Gene3D - 177 256 - -
Amo15g1424 356 CDD DnaJ 4 59 IPR001623 -
Amo15g1424 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 258 IPR008971 GO:0006457|GO:0051082
Amo15g1424 356 Gene3D DnaJ domain 1 80 IPR036869 -
Amo15g1424 356 CDD DnaJ_C 183 340 - -
Amo15g1424 356 MobiDBLite consensus disorder prediction 88 127 - -
Amo15g1424 356 SMART dnaj_3 3 62 IPR001623 -
Amo15g1424 356 Pfam DnaJ C terminal domain 182 337 IPR002939 -
Amo15g1424 356 SUPERFAMILY Chaperone J-domain 3 83 IPR036869 -
Amo15g1424 356 Pfam DnaJ domain 4 67 IPR001623 -
Amo15g1424 356 SUPERFAMILY HSP40/DnaJ peptide-binding domain 261 346 IPR008971 GO:0006457|GO:0051082
Amo15g1424 356 MobiDBLite consensus disorder prediction 74 127 - -
Amo15g1424 356 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Amo15g1424 356 PANTHER BNAA06G20720D PROTEIN 2 355 - -
Amo15g1424 356 Gene3D - 258 338 - -
Amo15g1424 356 PRINTS DnaJ domain signature 6 24 IPR001623 -
Amo15g1424 356 PRINTS DnaJ domain signature 42 62 IPR001623 -
Amo15g1424 356 PRINTS DnaJ domain signature 62 81 IPR001623 -
Amo15g1424 356 PRINTS DnaJ domain signature 24 39 IPR001623 -
Amo15g1424 356 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1424 Amo-Chr15 107924942 107930345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1424 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 3.15e-09 56.6