LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1419	ATGTTCAATTTTGTGCTTCAGATGAGTTCTTTGGTTACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTATGATGGGGCTTTATGATTCTGCTTACTGGTTGTCCTGGCTCATCTGGGAGGCATTCATTACTCTCCTGTCATCCCTTCTCGTAGTTCTGTTTGGAATGATGTTTCAGTTTCGTTTCTTCTTGAAAAACGATTTTCTGGTCGTGTTCTTTGTGTTCTTCCTATTTGAACTCAGTATGACTGGCTTAGCTTTCATGCTATCTGCTTTCATTAGTAAATCCTCTTCAGCGACAACAGTAGGCTTCTCCATATTTATTGTTGGCTTTGTGACTCAGCTTGTTATACAAGCAGGATTTCCTTATTCAGATAGCATTTCCAAGACTTTCCGAATAATTTGGTCTTTCTTTCCGCCCAATCCCTTCGCTCAAGCTCTACATATTCTTTCTGAGGCGGTCTCAACTTCTGAAGATCATGGTATTCGATGGAGTAAACGGGGACAATGCGGTCCTGAAGATGAAGGCTGTGTGATTACAATTAATGACATTTATCAATGGCTCTTAGCTACATTCGTTTTGTGGTTTGTTCTGGCCATCTACTTCGACAACATAATCCCCAATGCATCTGGTGTGAGGAAATCGATGTTATACTTTCTAAATCCGAACTATTGGATGGGAAGAGGAGGCCAAAATGTGAAAGAGGGTGGGGTTTGTAGTTGCTGCATAGTTTCAGTGCCTCGTCAAGAACATGTTACACCAGATGATCAAGATGTCCTTGAAGAACAAAATACTGTCAAAAGACAAATAACAGAAGGTGTGGTTGATGCAAATGTTGCTGTTCAGATACGTGGCCTTGCAAAGACATATCCTGGTTCTTGTAATATTGGTTGCTGCTGTAAATGTAAAAGAACTAAACCTTACAATGCCGTTAAGGATTTATGGGTGAACTTTGAAAGGGATCAACTATTTTGTCTATTAGGACCTAATGGAGCGGGTAAAACTACGGTTATTAATTGTTTGACAGGGATAACTCCAGCAACTGATGGAGATGCATTGATTTATGGACATTCCATCCGTAGCTCCACTGGCATGTCAAACATTCAAAAGCTTATAGGAGTATGTCCCCAGTTTGATATCTTGTGGGATGCACTGTCCGGCGAAGAGCATCTTCAACTCTTTGCTACTATCAAAGGCCTAACCCCAAGTTCCATCAACTCAATTACCCAAACATCACTGGCAGAGGTGAGACTCACTGATTCGGCAAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGTCGACTCAGTGTTGCAATTTCCCTTATTGGTGACCCTAAATTGGTTGTTTTGGATGAACCAACTACTGGTATGGATCCAATAACAAGGAGGCACGTATGGGACATAATTGAAAATGCTAAAAGAGGTCGTGCCATTGTCCTTACCACACACTCTATGGAAGAAGCTGACATTCTCAGTGATCGAATAGGAATCATGGCAAAGGGAAAGCTTCGCTGTATTGGCACCGCAATCAGATTGAAGTCACGCTTTGGTACTGGTTTCATTGCTAATATCAGCTTCTATGGGAACAATGTTGAAAGTCGTACAGACAATAGGGATGCTGTTTCTACGGTACATCATGAGGCTGTGAAGCAATTCTTTAAGAATCATTTAGATGTAGTGCCAAAGGAAGAGAACAACAACTTCATAACTTTTGTGATTCCTCATGACAAAGAGGGGCTCCTGACAAATTTTTTTGCGGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGACATTCAGCTTGGTCTGACAACTCTAGAAGAAGTTTTCCTGAATATTGCAAAGCAAGCAGAGCTAGAAAGCGCTGCAGCTGATGGGACCCTAGTGACTTTGACCTTAACATCTGGGGAGTCTGTGCAGATTCCTATAGGAGCTAGATTTGTTGGAATTCCAGAAACAGAGTCTGAAGAGTACCCAACAGGGGTTATGGTAGAAGTATACTGGGAGCAAGATGAATCTGGTGCTCTATGTATCTCTGGTCACTCACAAAAAGTTCCAGTTCCTTCTGGTGTTCGACTATCATCATCTGCTTCGGCAAGACACCGTAGAAATTCGCGCCGACCAGGATCAGTTCACGGGGTTATAATTGATCCCAGCCAAGTTAGTTCAGTCAGGTTTCAATGA	2196	0.4203	MFNFVLQMSSLVTEKELKLRQAMTMMGLYDSAYWLSWLIWEAFITLLSSLLVVLFGMMFQFRFFLKNDFLVVFFVFFLFELSMTGLAFMLSAFISKSSSATTVGFSIFIVGFVTQLVIQAGFPYSDSISKTFRIIWSFFPPNPFAQALHILSEAVSTSEDHGIRWSKRGQCGPEDEGCVITINDIYQWLLATFVLWFVLAIYFDNIIPNASGVRKSMLYFLNPNYWMGRGGQNVKEGGVCSCCIVSVPRQEHVTPDDQDVLEEQNTVKRQITEGVVDANVAVQIRGLAKTYPGSCNIGCCCKCKRTKPYNAVKDLWVNFERDQLFCLLGPNGAGKTTVINCLTGITPATDGDALIYGHSIRSSTGMSNIQKLIGVCPQFDILWDALSGEEHLQLFATIKGLTPSSINSITQTSLAEVRLTDSAKVRAGSYSGGMKRRLSVAISLIGDPKLVVLDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTAIRLKSRFGTGFIANISFYGNNVESRTDNRDAVSTVHHEAVKQFFKNHLDVVPKEENNNFITFVIPHDKEGLLTNFFAELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESAAADGTLVTLTLTSGESVQIPIGARFVGIPETESEEYPTGVMVEVYWEQDESGALCISGHSQKVPVPSGVRLSSSASARHRRNSRRPGSVHGVIIDPSQVSSVRFQ*	732

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1419	731	CDD	ABC_subfamily_A	282	516	-	-
	Amo15g1419	731	Gene3D	-	271	552	IPR027417	-
	Amo15g1419	731	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	1	698	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Amo15g1419	731	SMART	AAA_5	321	505	IPR003593	-
	Amo15g1419	731	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	282	528	IPR003439	GO:0005524
	Amo15g1419	731	Pfam	ABC transporter	313	457	IPR003439	GO:0005524
	Amo15g1419	731	ProSitePatterns	ABC transporters family signature.	430	444	IPR017871	GO:0005524
	Amo15g1419	731	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	304	510	IPR027417	-
	Amo15g1419	731	Pfam	ABC-2 family transporter protein	4	202	-	-
	Amo15g1419	731	PANTHER	ABC TRANSPORTER A FAMILY MEMBER 1-RELATED	1	698	-	-
	Amo15g1419	731	MobiDBLite	consensus disorder prediction	692	718	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1419	Amo-Chr15	107743931	107748574	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1419	260	527	Calmodulin-binding Proteins	AT2G36910	18.978	9.49e-09	57.0