LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1414	ATGGAAGTGACGAGCGGTTTGGCACTGCTCTTTCAGCAATTCAGCGCTCTCTTACGGAAGAACCTTCTGCTGTCATGGCGAAACAGGAAGGCGACGCTGCTTCAGGTTCTGTCACCACTCTTCTTCATGTTCCTCATCTTCGCCATTGACAAGGCAATTAAAGCTCAGTACTCGAACACAACTTACTACAAGAGCGTCCCTGAGCCTCCGCTTCGCCCTTCACCTTCCATCCCTCCATGCGAGAACAAGTTCTTCGTCAAACTCCCTTGCTATGATTTTGTATGGAGCGGTGATCGCAACCCTAGAATTCGGACCATTGTTGAAGCTATCATGAACAATAACCCTGGAAGGACTATACCTCCCTCTAAGGTGAAATCCTTTAGTGATAAAGCTGCAGTGGACGAGTGGCTTTTGAACAACCCTATGCACTGTCCAGGGGCTTTGCATTTTGTGGAAAGAAGTAAAACTATCATCAGCTATGGTTTACAGACAAATTCCACATATGTTCAAAAGAGAGGCAAATATGAAGACCCCACTTTTGCATTTCAACTTCCGCTTCAGCTTGCTGCAGAGCGAGAAATAGCTAGGAACCTGATTGGAGACTCGAACTTCAGCTGGAATGTCTTTTTGAGGGAGTTTGCACACCCAGCCACGGCACCTTTCTCAACAGTGAGTTCCGTAGGTCCAACATTTTTCCTTGCGATTGCCATGTTCAATTTTGTGCTTCAGATGAGTTCTTTGGTTACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTATGATGGGACTTTATGATTCTGCTTACTGGTTGTCCTGGCTCATCTGGGAGGCATTCATTACTCTCCTGTCATCCCTTCTCGTAGTTCTCTTTGGAATGATGTTTCAGTTTCGTTTCTTCTTGAAAAACGATTTTCTGGTCGTGTTCTTTGTGTTCTTCCTATTTGAACTCAGTATGACTGGCTTAGCTTTCATGCTATCTGCTTTCATTAGTAAATCCTCTTCAGCGACAACAGTAGGCTTCTCCATATTTATTGTTGGCTTTGTGACTCAGCTTGTTACACAAGCAGGATTTCCTTATTCAGATAGCATTTCCAAGACTTTCCGAATAATTTGGTCTTTCTTTCCGCCCAATCCCTTTGCTCAAGCTCTATATATTCTTTCTGAGGCGGTCTCAACTTCTGAAGATCATGGTATTCGATGGAGTAAACGGGGACAATGCGGTCCTGAAGATGAAGGCTGTGTGATTACAATTAATGACATTTATCAATGGCTCTTAGCTACATTCGTTTTGTGGTTTGTTCTGGCCATCTACTTCGACAACATAATCCCCAATGCATCTGGTGTGAGGAAATCGATGTTATACTTTCTAAATCCGAATTATTGGATGGGAAGAGGAGGCCAAAATGTGAAAGAGGGTGGGGTTTGTAGTTGCTGCATAGTTTCAGTGCCTCGTCAAGAGCATGTTACACCAGATGATCAAGATGTCCTTGAAGAACAAAATACTGTCAAAAGACAAATAACAGAAGGTGTGGTTGATGCAAATGTTGCTGTTCAGATACGTGGCCTTGCAAAGACATATCCTGGTGCTTGTAATATTGGTTGCTGCTGTAAATGTAAAAGAACTAAACCTTACAATGCCGTTAAGGATTTATGGGTGAACTTTGAAAGGGATCAACTATTTTGTCTTTTAGGACCTAATGGAGCGGGTAAAACTACGGTTATTAATTGTTTGACAGGGATAACTCCAGCAACTGATGGAGATGCATTGATTTATGGACATTCCATCCGTAGCTCCACTGGCATGTCAAATATTCAAAAGCTTATAGGAGTATGTCCCCAGTTTGATATCTTGTGGGATGCACTGTCCGGCGAAGAGCATCTTCAACTCTTTGCTACTATCAAGGGCCTAACCCCAAGTTCCATCAACTCAATTACCCAAACATCACTGGCAGAGGTGAGACTCACTGATTCGGCAAAAGTGAGAGCGGGAAGTTACAGTGGAGGAATGAAACGTCGACTCAGTGTTGCAATTTCCCTTATTGGTGACCCTAAATTGGTTGTTTTGGATGAACCAACTACTGGTATGGATCCAATAACAAGGAGGCACGTATGGGACATAATTGAGAATGCTAAAAGAGGTCGTGCCATTGTCCTTACCACACACTCTATGGAAGAAGCTGACATTCTCAGTGACCGAATAGGAATCATGGCAAAGGGAAAGCTTCGCTGCATTGGCACCGCAATCAGATTGAAGTCACGCTTTGGAACTGGTTTCATTGCTAATATCAGCTTCTATGGAAACAATGTTGAAAGTCGTACAGACAATAGGGATGCTGTTTCTACGGTACATCAGGAGGCTGTGAAGCAATTCTTTAAGAATCATTTAGATGTAGTGCCAAAGGAAGAGAACAACAACTTCATCACTTTTGTGATTCCTCATGACAAAGAGGGGCTCCTGACAAATTTTTTCGCGGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCTGACATTCAGCTTGGTCTGACAACTCTAGAAGAAGTTTTCCTGAATATTGCAAAGCAAGCAGAGCTAGAAAGCGCTGCTGCTGATGGGACCCTAGTAACTTTGACCTTAACATCTGGGGAGTCTCTGCAGATTCCTATAGGAGCTAGATTTGTTGGAATTCCAGAAACAGAGTCTGAAGAGTACCCAACAGGGGTTATGGTAGAAGTATACTGGGAGCAAGATGAATCTGGTGCTCTATGTATCTCTGGTCACTCACAAAAAGTTCCAGTTCCTTCTGGTGTTCGACTATCATCATCTGCTTCGGCAAGACACCGTAGAAATTCGCGCCGACCAGGATCAGTTCACGGGGTTATAATTGATCCTAGCCAAGTTAGTTCAGTCAGGTTTCAATGA	2904	0.4335	MEVTSGLALLFQQFSALLRKNLLLSWRNRKATLLQVLSPLFFMFLIFAIDKAIKAQYSNTTYYKSVPEPPLRPSPSIPPCENKFFVKLPCYDFVWSGDRNPRIRTIVEAIMNNNPGRTIPPSKVKSFSDKAAVDEWLLNNPMHCPGALHFVERSKTIISYGLQTNSTYVQKRGKYEDPTFAFQLPLQLAAEREIARNLIGDSNFSWNVFLREFAHPATAPFSTVSSVGPTFFLAIAMFNFVLQMSSLVTEKELKLRQAMTMMGLYDSAYWLSWLIWEAFITLLSSLLVVLFGMMFQFRFFLKNDFLVVFFVFFLFELSMTGLAFMLSAFISKSSSATTVGFSIFIVGFVTQLVTQAGFPYSDSISKTFRIIWSFFPPNPFAQALYILSEAVSTSEDHGIRWSKRGQCGPEDEGCVITINDIYQWLLATFVLWFVLAIYFDNIIPNASGVRKSMLYFLNPNYWMGRGGQNVKEGGVCSCCIVSVPRQEHVTPDDQDVLEEQNTVKRQITEGVVDANVAVQIRGLAKTYPGACNIGCCCKCKRTKPYNAVKDLWVNFERDQLFCLLGPNGAGKTTVINCLTGITPATDGDALIYGHSIRSSTGMSNIQKLIGVCPQFDILWDALSGEEHLQLFATIKGLTPSSINSITQTSLAEVRLTDSAKVRAGSYSGGMKRRLSVAISLIGDPKLVVLDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTAIRLKSRFGTGFIANISFYGNNVESRTDNRDAVSTVHQEAVKQFFKNHLDVVPKEENNNFITFVIPHDKEGLLTNFFAELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESAAADGTLVTLTLTSGESLQIPIGARFVGIPETESEEYPTGVMVEVYWEQDESGALCISGHSQKVPVPSGVRLSSSASARHRRNSRRPGSVHGVIIDPSQVSSVRFQ*	968

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1414	967	Pfam	ABC transporter	549	693	IPR003439	GO:0005524
	Amo15g1414	967	PANTHER	ABC TRANSPORTER A FAMILY MEMBER 1-RELATED	7	934	-	-
	Amo15g1414	967	MobiDBLite	consensus disorder prediction	928	954	-	-
	Amo15g1414	967	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	7	934	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Amo15g1414	967	ProSitePatterns	ABC transporters family signature.	666	680	IPR017871	GO:0005524
	Amo15g1414	967	SMART	AAA_5	557	741	IPR003593	-
	Amo15g1414	967	Pfam	ABC-2 family transporter protein	30	438	-	-
	Amo15g1414	967	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	540	746	IPR027417	-
	Amo15g1414	967	CDD	ABC_subfamily_A	518	752	-	-
	Amo15g1414	967	Gene3D	-	507	796	IPR027417	-
	Amo15g1414	967	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	518	764	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1414	Amo-Chr15	107626373	107632666	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1414	496	763	Calmodulin-binding Proteins	AT2G36910	18.978	2.11e-08	56.6