Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1381 ATGTCATCACAGACAACCGCCACGGAGGCAGCGGAGCCCCAGGCGCCACTCCTCCGCTCCCGCCACGGGAACTCTGATGCCTCCGCCGCGTCTCGGGCTCCAACCCTCGCGCTTCTGCTGGGCCGAGCCACGGGCCGCCGTGGCCCGTCCATGCTGGTCCGCGAGACTGCAGCGCGGGAGCTGGAGGAGCGGCGGGCCGACTGGGGATACTCGAAGCCGGTCGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTAGTGGTCTCAGCGGTGATGCTTGCGTGCACCTTGGATGAGCGGCCGAACACGCCGATCCGCCTGTGGATCTTCGGGTACGGGCTGCAGTGCCTGCTGCACGTGGTGCTGGTGTGGCTCGAGTACCGGCGCCGGAACCAAAGGAATTCGCGGCGTCAGCGAAGGACGAGTGGCATAGAAAGCGAGGATGCTGATAGCTTTGAGGATGCCAACGATAGTGACGATGATGATGTTGGTGATGGAAACTCTTCTCACTCCGGATTCACAAAACGATGTGAGTCGTTTAATACGGGGATTTCATTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGCTTATACTGGTTGGCTGTTGTGTTTTTGGCATTTGACGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTAATTGGCATTGCCCTCTGTTGTTGTTTGCCTTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTCAGTATAATTCCAAAATACAGATTTGAAATTTTAAGCGATGAGGAAAAGCCTACTGGGGGAGCTGGAAGAATGGTTCCCATTGAAACCAGTAGTGGATATGTTGCAAACGAACGGACACTTTTGCCAGAGGATGCGGAATGTTGCATATGCCTTTGTCCTTACGAGGATGGAACAGAGCTCCATGCTCTTCCGTGCAATCATCATTTTCATTCTTTATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAAGGAAATGAACAAGTGTGA 1089 0.5271 MSSQTTATEAAEPQAPLLRSRHGNSDASAASRAPTLALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLACTLDERPNTPIRLWIFGYGLQCLLHVVLVWLEYRRRNQRNSRRQRRTSGIESEDADSFEDANDSDDDDVGDGNSSHSGFTKRCESFNTGISFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSIIPKYRFEILSDEEKPTGGAGRMVPIETSSGYVANERTLLPEDAECCICLCPYEDGTELHALPCNHHFHSLCIVKWLKMNATCPLCKYNILKGNEQV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1381 362 MobiDBLite consensus disorder prediction 1 30 - -
Amo15g1381 362 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
Amo15g1381 362 SMART ring_2 311 351 IPR001841 -
Amo15g1381 362 PANTHER TARGET OF ERK KINASE MPK-1 9 362 - -
Amo15g1381 362 SUPERFAMILY RING/U-box 298 356 - -
Amo15g1381 362 Pfam Ring finger domain 310 352 IPR001841 -
Amo15g1381 362 MobiDBLite consensus disorder prediction 136 172 - -
Amo15g1381 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 360 IPR013083 -
Amo15g1381 362 MobiDBLite consensus disorder prediction 148 162 - -
Amo15g1381 362 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1381 Amo-Chr15 105395772 105408144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1381 3 361 C3H Transcription Factor Family AT1G68070 65.738 1.14e-173 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1381 - K13148 aip:107643865 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1381 15 105395772 105408144 Amo15g1381 15 105395772 105408144 ECH