LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1367	ATGAGTAGCAATGAACAAACTTCTGGTGCTAGTCACAACGCCAGGGCTTTAATATCCAACGCTGCTGCTGGTGCTTCTGCTGGGGCCATAGCAGCTACGTTTGTGTGTCCGTTGGATGTGATCAAAACAAGGTTACAAGTCCATGGTCTTCCTCCTTCACATAAAGGTAGTGTAATCATCATGAGCCTGAAGAATATAGTAAGAAACGAAGGTGTTAGGGGAATGTACCGTGGGCTTTCACCAACAATACTGGCTTTACTACCAAACTGGGCAGTTTACTTCACAGTTTATGAGCAACTAAAGGGACTGCTTCGTTCACAGGATGGTAGCAATGAACTCACAACTATTAGAAACATTATAGCTGCTGCTGGTGCTGGGGCAGCAACAGCGATTTCTACAAACCCATTGTGGGTTGTTAAGACAAGACTCCAAACACAAGGAATGAGGCCGAATGTTGTTCCTTACAAAAGTGTTCTGTCTGCTTTGACAAGGATTACCCGTGAAGAAGGCTTGCGAGGACTATATAGTGGCATTATGCCTTCATTGGCTGGTGTAAGTCATGTTGCAATTCAATTCCCAGCATATGAAAGTATCAAGTCATACATGGCAAAAAAAGATAATACAACTGTTGACAAGCTTAGTCCTGGAAGTGTTGCCATTGCATCATCAATTTCAAAAGTACTTGCCTCCGTAATGACTTATCCGCATGAGGTGATACGATCAAGGCTGCAAGAGCAAGGCCAGGCCAAAAACATGGGGGTCCATTATGAAGGGGTTATAGATTGTACTAAGAAGGTTTTCCATAAAGAAGGCATTCCGGGTTTTTATCGCGGTTGCGCAACCAATCTGTTAAGAACAACTCCATCTGCTGTTATTACCTTCACCAGTTACGAGATGATACATCGGTTCTTGTTGCGGGTTATACCGGAGAACAAGGGTTATCCGCAAAGCTGTCCGAAACCCAAGGCACTTAACAAGCCCCAGGAAGAAGGAAGTAACATCATTAAGAATGACTCCTCTGAGATGGGGCCATCACCATCTCAGTCTAACAAGACAGGCTCATCAATTCCTTTGGGAAACAAAGAGCAGCTAACACGACACTGA	1104	0.442	MSSNEQTSGASHNARALISNAAAGASAGAIAATFVCPLDVIKTRLQVHGLPPSHKGSVIIMSLKNIVRNEGVRGMYRGLSPTILALLPNWAVYFTVYEQLKGLLRSQDGSNELTTIRNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYKSVLSALTRITREEGLRGLYSGIMPSLAGVSHVAIQFPAYESIKSYMAKKDNTTVDKLSPGSVAIASSISKVLASVMTYPHEVIRSRLQEQGQAKNMGVHYEGVIDCTKKVFHKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRVIPENKGYPQSCPKPKALNKPQEEGSNIIKNDSSEMGPSPSQSNKTGSSIPLGNKEQLTRH*	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1367	367	MobiDBLite	consensus disorder prediction	316	367	-	-
	Amo15g1367	367	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Amo15g1367	367	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Amo15g1367	367	PANTHER	NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC	10	311	-	-
	Amo15g1367	367	Gene3D	Mitochondrial carrier domain	2	108	IPR023395	-
	Amo15g1367	367	Gene3D	Mitochondrial carrier domain	109	307	IPR023395	-
	Amo15g1367	367	SUPERFAMILY	Mitochondrial carrier	18	299	IPR023395	-
	Amo15g1367	367	Pfam	Mitochondrial carrier protein	112	205	IPR018108	-
	Amo15g1367	367	Pfam	Mitochondrial carrier protein	213	305	IPR018108	-
	Amo15g1367	367	Pfam	Mitochondrial carrier protein	18	105	IPR018108	-
	Amo15g1367	367	MobiDBLite	consensus disorder prediction	330	367	-	-
	Amo15g1367	367	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Amo15g1367	367	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Amo15g1367	367	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Amo15g1367	367	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Amo15g1367	367	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Amo15g1367	367	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Amo15g1367	367	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	10	311	IPR044712	GO:0006862\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1367	Amo-Chr15	104783023	104787838	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1367	33	361	Chloroplast and Mitochondria Gene Families	AT1G25380	64.706	5.19e-147	418

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g1367	K15115		-	gmx:100816376	563.918