Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1345 ATGATGAACTTTTCCTTGTTTGGTAGAAAGTTACAACATCTTTGTAGTAGCCCTTATTTTCACCTCAACTTCAGCTCATTTTTCATTCAACTTTGTTATTTCATGATCCTTTCTCTTTTTGGTTACTTGGGTCTCAAGATATCAAAGACAAGAACTCATGTTAAGCCCAATGATTTTGACCTTTTTTATACTTCGGTCTCTTCCTCTACTGTGTCTAGCATGACGGCGGTAGAAATGGAAGTTTTCTCTAACTCACAACTCATTCTCATGACCTTTCTTATGTTTGTTGGTGGTGAGGTTTTCACTTCCTTATTAGAACTTATGTTTGCTAGGTTCAATAATAATAACAATTATAATAATTCATCCACTTCGATGAAAAATAGTCTTCCAATAAAAGTGGTCAATGATCAAATTGAGCTTGGCTTAGTTTCTAGTCCTAATCATCACTCATCACAAGACCATAAACAAATCAATGATGTCAATGGTATCAATAATAATAATAACAACAATGTTCCAAGTGGCACAATAGTCTCCTATAATAACAATAAAGATATGCTACTTAGGTCTAACTCCCTTAAGTATTTGAGTCAGGTAGTTTTAGGTTACTTTTTGGTGCTTCAATTTGTTGGCACTTTCTTGGTTTCTATGTACATGAGCTTCATACCTAGTGCAAGGCAAGTACTTAGAGAAAAAGGTATCAAAACCCTAACATTTTCTTTATTCACCATAGTTTCAACTTTTGCAAGTTGTGGCTATGTCCCCACAAATGAAAATATGATAGTTTTCAAGAAGAATTCAGGCCTTCTTATTATTATTCTCCCATATATCCTTCTTGGTAACACCTTATATGCACCATGCTTGAGGTTTGTGATTTGGGTTCTTGAGAAAATTACCAAAAGAGAGGAATTTTCATACTTGCTTAAGAATTCAAAGGAAATAGGTTATGGTCATTTGCTACCTGCCCTTCATTCTTGGCTACTTGTTGCTACCGTTTTGGGGTTCAATATAATTCAATTTGTGATTTTTTGTTCCATGGAGTGGGGAACACAAATCATGGATGGTTTGAATCCTTATCAGAAATTTGTTGCGTCTTTGTTTCAAATCACAAATGCTAGACATTCTGGTGAATCTGTTTTTGACCTCTCTACCATCTCTTCAGCCATATTGGTCCTATTCGTCGTCATGATGTACCTTCCACCATACACAACATTCTTGCCCATAATGGACCACGAAACCGAAAATGATGCCAAGAAAGACAAAAGAAGCCTAGTGGAGTGCCTTGTGTTCTCTCAACTTTCATATTTGGTTATTTTCATTATTTTGATTTGCATCACTGAGAACAAAAGCCTCAGAGACGATCCTCTCAACTTTAATGTTTTCAATATCACCTTAGAAGTCATCAGTGCGTATGGGAACGTAGGTTTCTCAATGGGATATAGCTGCGCAAGGCGATTGAAAGCGAATGGTAGTTGCAAAGATTTATGGGTTGGATTTTCTGGGAAATGGAGCAACAAAGGCAAGTTCATCCTTATTCTTGTCATGTTCTTCGGAAGGCTCAAGAAATTCAACTTGAAAGGTGGCAAAGCTTGGGACCTATCCTAG 1602 0.3652 MMNFSLFGRKLQHLCSSPYFHLNFSSFFIQLCYFMILSLFGYLGLKISKTRTHVKPNDFDLFYTSVSSSTVSSMTAVEMEVFSNSQLILMTFLMFVGGEVFTSLLELMFARFNNNNNYNNSSTSMKNSLPIKVVNDQIELGLVSSPNHHSSQDHKQINDVNGINNNNNNNVPSGTIVSYNNNKDMLLRSNSLKYLSQVVLGYFLVLQFVGTFLVSMYMSFIPSARQVLREKGIKTLTFSLFTIVSTFASCGYVPTNENMIVFKKNSGLLIIILPYILLGNTLYAPCLRFVIWVLEKITKREEFSYLLKNSKEIGYGHLLPALHSWLLVATVLGFNIIQFVIFCSMEWGTQIMDGLNPYQKFVASLFQITNARHSGESVFDLSTISSAILVLFVVMMYLPPYTTFLPIMDHETENDAKKDKRSLVECLVFSQLSYLVIFIILICITENKSLRDDPLNFNVFNITLEVISAYGNVGFSMGYSCARRLKANGSCKDLWVGFSGKWSNKGKFILILVMFFGRLKKFNLKGGKAWDLS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1345 533 Pfam Cation transport protein 190 484 IPR003445 GO:0006812|GO:0008324|GO:0055085
Amo15g1345 533 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 4 533 - -
Amo15g1345 533 PANTHER SODIUM TRANSPORTER HKT1 4 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1345 Amo-Chr15 104034709 104040232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1345 46 532 Inorganic Solute Cotransporters AT4G10310 48.185 3.04e-158 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1345 K24976 - gmx:100779582 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1345 15 104034709 104040232 Amo15g1345 15 104034709 104040232 ECH
Amo05g3667 05 101406595 101415294 Amo15g1345 15 104034709 104040232 hybridization