Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1298 ATGCATGTCTCACAAGCCTTTAATTCATGTTTCACTTCCTGGAAAACGCATAGAACCCACTGCCCACTGGTTTTTTCGCCTTCGTTCTATACCCACTACCCAACCCTGAAATTTGTTATCCTAGAACCCACTACCCAACCCTATTTGATTTTTTCGCCTTCGTTCTATACCCAGCGTCCATTTAGCAAGAATGATCTCCTTCGAGTAACAGGTTCCGGAACTGGTACTCTGCTTTCGTGCGTCGGATTAGGTAAAGGTCACCTCCCTCCGACTCCGACAGTGCATTTTTTATCCGTTGAAGCTCAACCTCTGGTTGTCATCAAGCTTAATTTAGCTTCCCGTAGTTGCTGCCATTGGCTCTGTTTATTGACATTTTTTGAAGATGATGCTGATGACGACGATGTGGATTCGCTGGATTCCACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCGGATTTAATGATGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCTTGCCAATTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGAAATATGAGGTATCTTGATATGGATGATAGATCAAGGGAGGCAAGGTCACTAATGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTACCGGCCAATCGTCGTCTAACTAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATAGCTGACTTTAAGTCTCAATGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAATATTTTCAAAGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCCCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAAAAATGCCTGTGA 1311 0.4386 MHVSQAFNSCFTSWKTHRTHCPLVFSPSFYTHYPTLKFVILEPTTQPYLIFSPSFYTQRPFSKNDLLRVTGSGTGTLLSCVGLGKGHLPPTPTVHFLSVEAQPLVVIKLNLASRSCCHWLCLLTFFEDDADDDDVDSLDSTSKSEEVCGVKRIADLMMEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDMDDRSREARSLMRTKCPARLRVKLDYGCGRWKVSCFVESHNHDLTPPQFAHLVPANRRLTNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLEVYERSASCYFTRNIFKEIRNEIQRAGALNITVLSTTLDKVEFSVTAPGDPAKDRRVEVDRGKNLFSCSCKLFESRGIPCSHIFCAMKFENILEFPDSLIYKGGQRMQRTNLLAQKCL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1298 436 SMART 26again6 384 411 IPR006564 GO:0008270
Amo15g1298 436 PANTHER OS03G0181600 PROTEIN 282 420 - -
Amo15g1298 436 PANTHER OS03G0181600 PROTEIN 160 279 - -
Amo15g1298 436 ProSiteProfiles Zinc finger SWIM-type profile. 373 409 IPR007527 GO:0008270
Amo15g1298 436 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 282 420 IPR031052 GO:0006355
Amo15g1298 436 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 160 279 IPR031052 GO:0006355
Amo15g1298 436 Pfam FAR1 DNA-binding domain 174 264 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1298 Amo-Chr15 101673102 101675781 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo15g1298 FAR1 2e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1298 - - ahf:112755379 310.071